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The map label for this gene is yocS [H]

Identifier: 89255770

GI number: 89255770

Start: 325343

End: 326275

Strand: Direct

Name: yocS [H]

Synonym: FTL_0345

Alternate gene names: 89255770

Gene position: 325343-326275 (Clockwise)

Preceding gene: 89255769

Following gene: 89255771

Centisome position: 17.16

GC content: 30.76

Gene sequence:

>933_bases
ATGATGAAAATGAACTTTATCCAAAAATATTTTGCGATTATAGTGATAGCGGGAGTTATTTTAGCAATCTCAATACCTTC
TATATTTATACCATTAAAGCCTTATATTACTTATTTATTGGCTGCTATTATGTTGATTATAGGGCTGCATTTGCAAGCAA
AAGACTTTGTGAAGGTGGCTGCTAACCTCAAGGGAAAGCTACTAGTTATATTGTTTTTGAAATTAACTGTTACATCAATA
GCTGCTTTTATAATTGGTAAGCTCTTTGGTTTGAGCTTAACCGCATTGATAGGTTTAGTTATTGTTGGCGCTTGTCCAGG
AGGCACGGCTTCTGGAGTGATGGCTTTACTAGCTAGAGCAAATATATCATTAGTTGTCAGTTTAACTTTTTTGACTACTC
TATTAGCGCCAATATTTATGCCATTAATCATTTATTTTTTCTTTTCAAAGAGTATTAAGTTAGATTGGTTTGGTATGTTT
GAAACTATGGCAATAATAGTTATTGTACCGATAGTTTTAGGAATTTTAATTAGTAAATTTACCAAACTAAATGATTCAAC
TTTAAAGAAAATCTCTAATATTCCGATACTTTTGATTATGTTGATAGTAATGGTCGTAACAGCTTTAAACAAAGACACTA
TGATGCTTGTACCAACCGATATTATTCTAAGCGTTATAATACTCAGTATATTTGCTAATATTTTTGGTTATTTAATAGGT
AGGGTTCTAGGTCTAGATATTGATAGTAGGTTAGCATTATTATTTGAGTTTAGTATATTAGATGTTGGTTTAGGAATTGT
GATAGCTTTAGCTTTCTTTGGTAATCAAGCAGCCATTGCGGCAACTTTTTATGCAATTTGGCAGAATATTATTGGACCTA
TAATTGTTAACCTTGTAAATATATGTCGCAATACTAAATTTAAATCTTCTTAA

Upstream 100 bases:

>100_bases
CTTTCCAAGCTTATTTCTTATTTTAGATGTTATAAAAGATGAAAATCTATTCTTATATTTAATTTTTTATGTAAAATATT
TCAAAAAAATTTACTTAAGA

Downstream 100 bases:

>100_bases
AATATTTAATTAACAAAAAAGTCTAATTTAGAATAAAATATCTAAAAAGTGGTTTTAGATATCAAAATGAAGCCGGAATT
AAAAACATTTATAAATGTCG

Product: bile acid symporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MMKMNFIQKYFAIIVIAGVILAISIPSIFIPLKPYITYLLAAIMLIIGLHLQAKDFVKVAANLKGKLLVILFLKLTVTSI
AAFIIGKLFGLSLTALIGLVIVGACPGGTASGVMALLARANISLVVSLTFLTTLLAPIFMPLIIYFFFSKSIKLDWFGMF
ETMAIIVIVPIVLGILISKFTKLNDSTLKKISNIPILLIMLIVMVVTALNKDTMMLVPTDIILSVIILSIFANIFGYLIG
RVLGLDIDSRLALLFEFSILDVGLGIVIALAFFGNQAAIAATFYAIWQNIIGPIIVNLVNICRNTKFKSS

Sequences:

>Translated_310_residues
MMKMNFIQKYFAIIVIAGVILAISIPSIFIPLKPYITYLLAAIMLIIGLHLQAKDFVKVAANLKGKLLVILFLKLTVTSI
AAFIIGKLFGLSLTALIGLVIVGACPGGTASGVMALLARANISLVVSLTFLTTLLAPIFMPLIIYFFFSKSIKLDWFGMF
ETMAIIVIVPIVLGILISKFTKLNDSTLKKISNIPILLIMLIVMVVTALNKDTMMLVPTDIILSVIILSIFANIFGYLIG
RVLGLDIDSRLALLFEFSILDVGLGIVIALAFFGNQAAIAATFYAIWQNIIGPIIVNLVNICRNTKFKSS
>Mature_310_residues
MMKMNFIQKYFAIIVIAGVILAISIPSIFIPLKPYITYLLAAIMLIIGLHLQAKDFVKVAANLKGKLLVILFLKLTVTSI
AAFIIGKLFGLSLTALIGLVIVGACPGGTASGVMALLARANISLVVSLTFLTTLLAPIFMPLIIYFFFSKSIKLDWFGMF
ETMAIIVIVPIVLGILISKFTKLNDSTLKKISNIPILLIMLIVMVVTALNKDTMMLVPTDIILSVIILSIFANIFGYLIG
RVLGLDIDSRLALLFEFSILDVGLGIVIALAFFGNQAAIAATFYAIWQNIIGPIIVNLVNICRNTKFKSS

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 33704; Mature: 33704

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKMNFIQKYFAIIVIAGVILAISIPSIFIPLKPYITYLLAAIMLIIGLHLQAKDFVKVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ANLKGKLLVILFLKLTVTSIAAFIIGKLFGLSLTALIGLVIVGACPGGTASGVMALLARA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
NISLVVSLTFLTTLLAPIFMPLIIYFFFSKSIKLDWFGMFETMAIIVIVPIVLGILISKF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TKLNDSTLKKISNIPILLIMLIVMVVTALNKDTMMLVPTDIILSVIILSIFANIFGYLIG
HHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHH
RVLGLDIDSRLALLFEFSILDVGLGIVIALAFFGNQAAIAATFYAIWQNIIGPIIVNLVN
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
ICRNTKFKSS
HHHCCCCCCC
>Mature Secondary Structure
MMKMNFIQKYFAIIVIAGVILAISIPSIFIPLKPYITYLLAAIMLIIGLHLQAKDFVKVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ANLKGKLLVILFLKLTVTSIAAFIIGKLFGLSLTALIGLVIVGACPGGTASGVMALLARA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
NISLVVSLTFLTTLLAPIFMPLIIYFFFSKSIKLDWFGMFETMAIIVIVPIVLGILISKF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TKLNDSTLKKISNIPILLIMLIVMVVTALNKDTMMLVPTDIILSVIILSIFANIFGYLIG
HHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHH
RVLGLDIDSRLALLFEFSILDVGLGIVIALAFFGNQAAIAATFYAIWQNIIGPIIVNLVN
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
ICRNTKFKSS
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]