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The map label for this gene is xerC [H]

Identifier: 89255722

GI number: 89255722

Start: 274801

End: 275679

Strand: Reverse

Name: xerC [H]

Synonym: FTL_0290

Alternate gene names: 89255722

Gene position: 275679-274801 (Counterclockwise)

Preceding gene: 89255723

Following gene: 89255721

Centisome position: 14.54

GC content: 32.42

Gene sequence:

>879_bases
ATGACTAATTTAGAGCATATCAATAATTTTCTTGACAACTTACTTTATCTTAAAAACTATTCTCAAGAAACTATTAATAA
CTATCAAAGGGATCTATTGCAACTAAATCAAGCTCTTAGTGATAAAAATATTATTAGTTTAACTCATAGTGATATATTGA
TATGGATAAAAAAGCTACATGCTCAAGGCAATTCTCCTAAGACACTCCAGCGTAAACTTAGTTCAGTTAGAAGCTTTTTT
AATTTTCTCATAAATAGCGAAATAGTATCACAAAATCCAGCTAACGGTATCAAAGCACCTAAAGATAGCAAAAGACTACC
CAAAGTAGTCAACACAGATGAATTGGCATATCTACTAGATATAAATCCAAGCAATGATATTGAAGCTCGTGATATTGCCT
GTTTTGATCTGTTGTATAGTTGTGGCATTAGACTTAGTGAATTATCATCAGTTGAACTAAAAGATATAAGCATATCACAA
AAAAATATTCGTGTTACAGGCAAAGGCAACAAACAACGTATTGTATACTTTGGTACCAAAACCTTAAGTAACCTCAATAG
ATGGCTCAAAATCAGAGATAGCTTAAAACCAAGCAGTGATTATCTATTTATTTCCCGTGATGGTAAACACTTGACAAATA
GATCAATTCAAAAGCGTCTTGAAATATTCGCTCAAAAATATGCTAGCCGCCATATCCATCCACATATGCTAAGGCATTCT
TTTGCTAGTCATGTACTTGATTCATCTAAAGATCTATTAGCTGTGAAAGATTTATTGGGTCATGCTGATATTTCTAGTAC
ACAGATATACACACATTTAAATTTCCAACAACTAGCAAGCGTTTTTGATAAAGCGCACCCTCGGGCAAAGAAAAAATAA

Upstream 100 bases:

>100_bases
AAATTTCAATTATAAGATATCCACGTATAAAAGTTTATGGCTAATTTCACTAGTTTCTGGTGTAATAGTTATATTATGTG
TTGTTGCTTAAAACTTAAGT

Downstream 100 bases:

>100_bases
TGCAGATAAATATTTCTAACTTAGATGTAAAGAATCACCTTGATAAATTTATAGAAGATAGATTAGAGTATGAGTTTTGC
AAGCAAGATAAATACTTATA

Product: integrase/recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MTNLEHINNFLDNLLYLKNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVRSFF
NFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDLLYSCGIRLSELSSVELKDISISQ
KNIRVTGKGNKQRIVYFGTKTLSNLNRWLKIRDSLKPSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHS
FASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK

Sequences:

>Translated_292_residues
MTNLEHINNFLDNLLYLKNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVRSFF
NFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDLLYSCGIRLSELSSVELKDISISQ
KNIRVTGKGNKQRIVYFGTKTLSNLNRWLKIRDSLKPSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHS
FASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK
>Mature_291_residues
TNLEHINNFLDNLLYLKNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVRSFFN
FLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDLLYSCGIRLSELSSVELKDISISQK
NIRVTGKGNKQRIVYFGTKTLSNLNRWLKIRDSLKPSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSF
ASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=296, Percent_Identity=38.8513513513513, Blast_Score=222, Evalue=2e-59,
Organism=Escherichia coli, GI1789261, Length=300, Percent_Identity=34.6666666666667, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1790767, Length=183, Percent_Identity=27.8688524590164, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790768, Length=162, Percent_Identity=27.1604938271605, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33494; Mature: 33363

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS00018 EF_HAND_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNLEHINNFLDNLLYLKNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLH
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHH
AQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
INPSNDIEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTK
CCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCEEEEEEECCCEEEEEECCCCEEEEEECHH
TLSNLNRWLKIRDSLKPSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHS
HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK
HHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TNLEHINNFLDNLLYLKNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLH
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHH
AQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
INPSNDIEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTK
CCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCEEEEEEECCCEEEEEECCCCEEEEEECHH
TLSNLNRWLKIRDSLKPSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHS
HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK
HHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA