Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

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The map label for this gene is 89056680

Identifier: 89056680

GI number: 89056680

Start: 4299631

End: 4300008

Strand: Direct

Name: 89056680

Synonym: Jann_4189

Alternate gene names: NA

Gene position: 4299631-4300008 (Clockwise)

Preceding gene: 89056679

Following gene: 89056690

Centisome position: 99.58

GC content: 62.7

Gene sequence:

>378_bases
ATGATGGAAGAAGACAAGCGGCTTAAACGCCTGCGTCAGATTTCAGGCGTCCTGGCGGACCAAGCCTTGCGCCCCGTCGT
GCAGGCGACTGCTGAAATTCACCGCATCGAAGCCCGTATCGCCGAAATCGCCGGTCATCGCGCGAAACTGACAAGCAGCA
CCAGCGATCCGTCAATCGCAGGCACGATGCTCAACCAGGCCGAGCGGTTGCGGGTAAAACAAGCGGCCGCGCTGTCTGAG
TTGGCAACAGCCCATGTAGCGCTCGACAAAGCGCGCCGCGCCGCCGCGAAGGCCGTTGGTCGAGACAGCGCCCTAAGCGC
CATCGCGGACAAAAAAAAGGCGGCCGCCCAACTGAAGGCGCGCCGCCAGAGCTCGTAG

Upstream 100 bases:

>100_bases
GCATAGAAGTTGGGGCGGCCATTCAGCCGGATCAATACCGCGCCGTTGCGGCCGCCATTCGCTTTGCGGATCTGATGCGT
TCCAAAGCGGTCGCCCGGGC

Downstream 100 bases:

>100_bases
TGAAGAAACCGTCAGGCGTCTTGCCGGGTGATATCCGTGATTAAGACATCGTGGGTCGTTCCACGGCCAAGCACGGATTG
AGCAGCTTCCCGCAAGGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MMEEDKRLKRLRQISGVLADQALRPVVQATAEIHRIEARIAEIAGHRAKLTSSTSDPSIAGTMLNQAERLRVKQAAALSE
LATAHVALDKARRAAAKAVGRDSALSAIADKKKAAAQLKARRQSS

Sequences:

>Translated_125_residues
MMEEDKRLKRLRQISGVLADQALRPVVQATAEIHRIEARIAEIAGHRAKLTSSTSDPSIAGTMLNQAERLRVKQAAALSE
LATAHVALDKARRAAAKAVGRDSALSAIADKKKAAAQLKARRQSS
>Mature_125_residues
MMEEDKRLKRLRQISGVLADQALRPVVQATAEIHRIEARIAEIAGHRAKLTSSTSDPSIAGTMLNQAERLRVKQAAALSE
LATAHVALDKARRAAAKAVGRDSALSAIADKKKAAAQLKARRQSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13431; Mature: 13431

Theoretical pI: Translated: 11.57; Mature: 11.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEEDKRLKRLRQISGVLADQALRPVVQATAEIHRIEARIAEIAGHRAKLTSSTSDPSIA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHH
GTMLNQAERLRVKQAAALSELATAHVALDKARRAAAKAVGRDSALSAIADKKKAAAQLKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RRQSS
HHCCC
>Mature Secondary Structure
MMEEDKRLKRLRQISGVLADQALRPVVQATAEIHRIEARIAEIAGHRAKLTSSTSDPSIA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHH
GTMLNQAERLRVKQAAALSELATAHVALDKARRAAAKAVGRDSALSAIADKKKAAAQLKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RRQSS
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA