| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89056674
Identifier: 89056674
GI number: 89056674
Start: 4291705
End: 4292322
Strand: Direct
Name: 89056674
Synonym: Jann_4183
Alternate gene names: NA
Gene position: 4291705-4292322 (Clockwise)
Preceding gene: 89056673
Following gene: 89056675
Centisome position: 99.39
GC content: 60.68
Gene sequence:
>618_bases ATGGCGACCTCTCGAAAAACACGCCGCTTAAAGCGTAACGGCCTTCTCATGTCCTTGGGCCTGATCTTCGCGGTTTCCGT CGTGTGGCGGGTCAGCACGCTGGATGTGCCATTGGTTTCAACCGCGCAGGCATCGGACCCTCAACCCATGCAATCCATCG TTGGGCCAACTGCCCCAATCCGCGCCGCCCTTGATGAAGTGACAGCACTTCGAGACAGGCTGGCCGCCAGGGAAGCCACC ATCGCGGACCGAGAGCGCGCGGTTGAGGCCGCGCAACTCTTGGTCGAAGAGCGGTTGGCTGTGCTGGAAGCGGCGGAACA ACGGCTTGAAGGTCTCATTCAGACGTCTGACACGGCGGCGGAAGCGGACATCACACGGCTGACCGAAGTCTATCAAACGA TGGAAGCCGATCAAACCGCGGCTCTGTTCGCGCAGATGGATCCAAACTTTGCCGCAGGCTTTCTGACCCGTATGACGCCG GCCGCCAGCGGCGCGATTATGGCAGAACTCGATCCTGTTGCGGCTTACGCAATCTCGGTCGTCATAGCCACGCGCAATGC GGCGGCCCCAACGCTTGAGCCCCCGCCACCAGATCCTGATCCGGATACCGAATCTTAA
Upstream 100 bases:
>100_bases CACACCGATGTTTGGCTCCAGACGTGCCGCCGCTAAACGGGAAGCCGCACAATCGACCGCTCCCCTATTCGCACGGCACA GATCGGCATTGGGCTAAGAC
Downstream 100 bases:
>100_bases GCCTTAGATGGCAAGCCGATAACAGCGCAGGAGAACCCGCAATGCTTGGAATAGTTGGAATTGCCGTCGTCTTGGTCATG GTCTTTGGCGGCTATGCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 205; Mature: 204
Protein sequence:
>205_residues MATSRKTRRLKRNGLLMSLGLIFAVSVVWRVSTLDVPLVSTAQASDPQPMQSIVGPTAPIRAALDEVTALRDRLAAREAT IADRERAVEAAQLLVEERLAVLEAAEQRLEGLIQTSDTAAEADITRLTEVYQTMEADQTAALFAQMDPNFAAGFLTRMTP AASGAIMAELDPVAAYAISVVIATRNAAAPTLEPPPPDPDPDTES
Sequences:
>Translated_205_residues MATSRKTRRLKRNGLLMSLGLIFAVSVVWRVSTLDVPLVSTAQASDPQPMQSIVGPTAPIRAALDEVTALRDRLAAREAT IADRERAVEAAQLLVEERLAVLEAAEQRLEGLIQTSDTAAEADITRLTEVYQTMEADQTAALFAQMDPNFAAGFLTRMTP AASGAIMAELDPVAAYAISVVIATRNAAAPTLEPPPPDPDPDTES >Mature_204_residues ATSRKTRRLKRNGLLMSLGLIFAVSVVWRVSTLDVPLVSTAQASDPQPMQSIVGPTAPIRAALDEVTALRDRLAAREATI ADRERAVEAAQLLVEERLAVLEAAEQRLEGLIQTSDTAAEADITRLTEVYQTMEADQTAALFAQMDPNFAAGFLTRMTPA ASGAIMAELDPVAAYAISVVIATRNAAAPTLEPPPPDPDPDTES
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21881; Mature: 21750
Theoretical pI: Translated: 4.28; Mature: 4.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATSRKTRRLKRNGLLMSLGLIFAVSVVWRVSTLDVPLVSTAQASDPQPMQSIVGPTAPI CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCHHH RAALDEVTALRDRLAAREATIADRERAVEAAQLLVEERLAVLEAAEQRLEGLIQTSDTAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH EADITRLTEVYQTMEADQTAALFAQMDPNFAAGFLTRMTPAASGAIMAELDPVAAYAISV HHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH VIATRNAAAPTLEPPPPDPDPDTES HHEECCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ATSRKTRRLKRNGLLMSLGLIFAVSVVWRVSTLDVPLVSTAQASDPQPMQSIVGPTAPI CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCHHH RAALDEVTALRDRLAAREATIADRERAVEAAQLLVEERLAVLEAAEQRLEGLIQTSDTAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH EADITRLTEVYQTMEADQTAALFAQMDPNFAAGFLTRMTPAASGAIMAELDPVAAYAISV HHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH VIATRNAAAPTLEPPPPDPDPDTES HHEECCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA