| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89056638
Identifier: 89056638
GI number: 89056638
Start: 4258312
End: 4258683
Strand: Direct
Name: 89056638
Synonym: Jann_4147
Alternate gene names: NA
Gene position: 4258312-4258683 (Clockwise)
Preceding gene: 89056637
Following gene: 89056639
Centisome position: 98.62
GC content: 62.1
Gene sequence:
>372_bases ATGAGCGCCCAGATGACCTCTGAAGCGCTGGCCGAGTTCCGGGTGCAGGTACCGGCGTGTCAGCTGGCTCTGTGGAGCGA CATTCGATCCGGTACGGTCTTGGCCGTCGACGGAACGCTCGACCATCCGCAGGAGTATCTTGATGCGTTCAGCTCCATGG CGGCGCAAGCTCTGTCTCTGCCCGGCCCGCGGAGCGACGAGGCAGCTTGTACCTTTGCCGCGAATGCGACGGGTCTGCAT CTGTTTGTCACCGGGGCGGCGATACCCGGCGTTGCACTAACCTGTGTTATGGCCCTGGACGCAGATGTTGATCAAATCGA AGACGCGGCTGTCTCGTTCTTGTCGTCCGTTGACCCCGCAGGGATGGCGTGA
Upstream 100 bases:
>100_bases CTCCACGTAAACCCAAGGTCAGTCCACGGCGGGTTAGTGCACTCGACGCTGGTGCTGCGCGGCCAAGGGCACGTCGCCAA CAGGCCGGGGATCGACTGAT
Downstream 100 bases:
>100_bases TGCAGACCTCGGCCGTCGTTCACGACATTTTGCTTGCAACCGCCTCGAAAGGGCGCGTCGCAAGAGATCTGTCCAAAGTA GGTGGCCAAGACGCCATCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 123; Mature: 122
Protein sequence:
>123_residues MSAQMTSEALAEFRVQVPACQLALWSDIRSGTVLAVDGTLDHPQEYLDAFSSMAAQALSLPGPRSDEAACTFAANATGLH LFVTGAAIPGVALTCVMALDADVDQIEDAAVSFLSSVDPAGMA
Sequences:
>Translated_123_residues MSAQMTSEALAEFRVQVPACQLALWSDIRSGTVLAVDGTLDHPQEYLDAFSSMAAQALSLPGPRSDEAACTFAANATGLH LFVTGAAIPGVALTCVMALDADVDQIEDAAVSFLSSVDPAGMA >Mature_122_residues SAQMTSEALAEFRVQVPACQLALWSDIRSGTVLAVDGTLDHPQEYLDAFSSMAAQALSLPGPRSDEAACTFAANATGLHL FVTGAAIPGVALTCVMALDADVDQIEDAAVSFLSSVDPAGMA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12646; Mature: 12515
Theoretical pI: Translated: 3.72; Mature: 3.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAQMTSEALAEFRVQVPACQLALWSDIRSGTVLAVDGTLDHPQEYLDAFSSMAAQALSL CCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC PGPRSDEAACTFAANATGLHLFVTGAAIPGVALTCVMALDADVDQIEDAAVSFLSSVDPA CCCCCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC GMA CCC >Mature Secondary Structure SAQMTSEALAEFRVQVPACQLALWSDIRSGTVLAVDGTLDHPQEYLDAFSSMAAQALSL CCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC PGPRSDEAACTFAANATGLHLFVTGAAIPGVALTCVMALDADVDQIEDAAVSFLSSVDPA CCCCCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC GMA CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA