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The map label for this gene is bphR [H]

Identifier: 89056631

GI number: 89056631

Start: 4250362

End: 4251021

Strand: Direct

Name: bphR [H]

Synonym: Jann_4140

Alternate gene names: 89056631

Gene position: 4250362-4251021 (Clockwise)

Preceding gene: 89056625

Following gene: 89056632

Centisome position: 98.43

GC content: 59.09

Gene sequence:

>660_bases
ATGATGACGCATCCCGCGGCCACCGTCGGCACCAGCACCTATCAAAAGATCAAGCGGGATATCCTGTTCGGGGCGCTGCA
GCCCGGTGCGAAGTTGAAGCTGGACACGTTGAAGCAAAACTACAATGCCAGCCTGTCTACATTGCGCGAAACGCTGAACC
GGCTGGCCAGCGAAGGTTTCGTCGATGCCCCTGAACAGCGGGGGTTCTTTGTCAAACCCGTGTCTGCAGATGATTTGCGC
GAGATAGCGCAGCTTCGGGTGCTTTTGGAATGCCACGCCCTGCGCCTGTCGATTGCACATGGCGATACAGAGTGGGAGGG
CAATCTGGTCGCAGCCCACCACAAGTTGCACGTCATGGAACTGCGTCTGCTGCAGGGCGACGAATCCGAGAAAGAGGCGT
GGAAGCGCTATGATTGGGAGTTTCATCAGGCGCTGATATCAGCGTGCCAGTCCGCAAACCTGCTGTCGCTACATGCGACG
CTTTACGACAAATACCTGCGCTACCAGATGCTGGTCTTGACCCATCGGGGGCAGGAGGCCGTTGAAGAGCATCGCGTGAT
GTTCGATGCGGCCCTCGCCCGCGATGCCGATGGCGCCGCAATCGCGCTGGAGACGCATATCATCAGAGGGTTGGAGCACA
CGGCCGAGGCGATGGCGTAG

Upstream 100 bases:

>100_bases
ATAATATCCGATATTTTATCAATTACCCGCCATATCAGCATTTCGCTATTAGACGGGCGTGATCCTATATGACTGAAAAT
CAAAAGAATATCGGACAATC

Downstream 100 bases:

>100_bases
GCGGCCGCGCTGACGGCGGTGGCGGACCGCGCAGGCCGAATTCTGTCGTCGGGGGCCCGATGGACAGCGAGACTGGCACC
GCGCTTTTTATCAGAAAACT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MMTHPAATVGTSTYQKIKRDILFGALQPGAKLKLDTLKQNYNASLSTLRETLNRLASEGFVDAPEQRGFFVKPVSADDLR
EIAQLRVLLECHALRLSIAHGDTEWEGNLVAAHHKLHVMELRLLQGDESEKEAWKRYDWEFHQALISACQSANLLSLHAT
LYDKYLRYQMLVLTHRGQEAVEEHRVMFDAALARDADGAAIALETHIIRGLEHTAEAMA

Sequences:

>Translated_219_residues
MMTHPAATVGTSTYQKIKRDILFGALQPGAKLKLDTLKQNYNASLSTLRETLNRLASEGFVDAPEQRGFFVKPVSADDLR
EIAQLRVLLECHALRLSIAHGDTEWEGNLVAAHHKLHVMELRLLQGDESEKEAWKRYDWEFHQALISACQSANLLSLHAT
LYDKYLRYQMLVLTHRGQEAVEEHRVMFDAALARDADGAAIALETHIIRGLEHTAEAMA
>Mature_219_residues
MMTHPAATVGTSTYQKIKRDILFGALQPGAKLKLDTLKQNYNASLSTLRETLNRLASEGFVDAPEQRGFFVKPVSADDLR
EIAQLRVLLECHALRLSIAHGDTEWEGNLVAAHHKLHVMELRLLQGDESEKEAWKRYDWEFHQALISACQSANLLSLHAT
LYDKYLRYQMLVLTHRGQEAVEEHRVMFDAALARDADGAAIALETHIIRGLEHTAEAMA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=215, Percent_Identity=31.6279069767442, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24669; Mature: 24669

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTHPAATVGTSTYQKIKRDILFGALQPGAKLKLDTLKQNYNASLSTLRETLNRLASEGF
CCCCCCCHHCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHCCC
VDAPEQRGFFVKPVSADDLREIAQLRVLLECHALRLSIAHGDTEWEGNLVAAHHKLHVME
CCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEHHHHHHHHH
LRLLQGDESEKEAWKRYDWEFHQALISACQSANLLSLHATLYDKYLRYQMLVLTHRGQEA
HHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
VEEHRVMFDAALARDADGAAIALETHIIRGLEHTAEAMA
HHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMTHPAATVGTSTYQKIKRDILFGALQPGAKLKLDTLKQNYNASLSTLRETLNRLASEGF
CCCCCCCHHCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHCCC
VDAPEQRGFFVKPVSADDLREIAQLRVLLECHALRLSIAHGDTEWEGNLVAAHHKLHVME
CCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEHHHHHHHHH
LRLLQGDESEKEAWKRYDWEFHQALISACQSANLLSLHATLYDKYLRYQMLVLTHRGQEA
HHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
VEEHRVMFDAALARDADGAAIALETHIIRGLEHTAEAMA
HHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1569021 [H]