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The map label for this gene is ttdB [H]

Identifier: 89056462

GI number: 89056462

Start: 4068593

End: 4069273

Strand: Direct

Name: ttdB [H]

Synonym: Jann_3971

Alternate gene names: 89056462

Gene position: 4068593-4069273 (Clockwise)

Preceding gene: 89056461

Following gene: 89056466

Centisome position: 94.22

GC content: 61.38

Gene sequence:

>681_bases
ATGAGCCCCACACCGAACAAACCCCGCGAAATTACCCTGTCCACCACACCGTCGGCTGAAGCCATCGCGGACCTGCGCCT
GGGCGATGTCGTCTACCTCTCCGGCCTGATGTATACGGCGCGCGAGGGCGTCTACATGCGCGCCCTGGAGGACCGCGCAA
ACATTCCGATGGAACTGCCCGCGCAATCGGCTGCGAACTTCCATTGCTCGCCCGCGGCCCGGATCAACGCCGATGGCTCG
TTCGACATGGGGGCCGTGACGGCCACAGCGAGCTTCCGATTTGCCAAGTGGTTGCCCGAATGGATGGCCAAGACCGGCGC
GAAGCTGATTGTGGGCAAGGGTGGCATGACCTCAAAGGACTACAAGGAATATTTCGTGCCCAACGGCGCAGTCTATCTGT
CGACCGTGGGCTACGGCACCGGCGCGCTTCTGGGGCGCGGGGTGGAGAATGTGGAGGCTGTGCATTGGAATGAAGAGCTT
GGGATCGCGCAGGCGATGTGGGTTCTGAAATGCAACAGAATGGGGCCGTTCATCGTGGCGTCCGATATGAATGGCGATTG
CCTGTTCGAACGGGAGAACGCCAAGATCGCGGAGAACGTCGCGCGCGTTTACGAGGGCACGAAGCCCGCGACGCTGAAAC
GGTACGGCGAGAGTGATGACCGCACGGATGAAGTTATCTAG

Upstream 100 bases:

>100_bases
TGACGAGAATCTTTCGCCAAGAACGTCCTTGGGTGGGCAAGGATGCCTTCGCAAAACAAGGGTCACCAGCTCACGCCGCA
TCCACTCCAGGAGCTGCCCC

Downstream 100 bases:

>100_bases
CCCGCGCGCTCTATCCGACCTTCGTCAGCTCACTGATCAGGATACCGATCCCCATCACGAAGTTCAGCCCGATCAGCAAG
CGCCGGAAGCCGGTATTGGT

Product: Fe-S type hydro-lyases tartrate/fumarate beta protein

Products: NA

Alternate protein names: L-TTD beta [H]

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MSPTPNKPREITLSTTPSAEAIADLRLGDVVYLSGLMYTAREGVYMRALEDRANIPMELPAQSAANFHCSPAARINADGS
FDMGAVTATASFRFAKWLPEWMAKTGAKLIVGKGGMTSKDYKEYFVPNGAVYLSTVGYGTGALLGRGVENVEAVHWNEEL
GIAQAMWVLKCNRMGPFIVASDMNGDCLFERENAKIAENVARVYEGTKPATLKRYGESDDRTDEVI

Sequences:

>Translated_226_residues
MSPTPNKPREITLSTTPSAEAIADLRLGDVVYLSGLMYTAREGVYMRALEDRANIPMELPAQSAANFHCSPAARINADGS
FDMGAVTATASFRFAKWLPEWMAKTGAKLIVGKGGMTSKDYKEYFVPNGAVYLSTVGYGTGALLGRGVENVEAVHWNEEL
GIAQAMWVLKCNRMGPFIVASDMNGDCLFERENAKIAENVARVYEGTKPATLKRYGESDDRTDEVI
>Mature_225_residues
SPTPNKPREITLSTTPSAEAIADLRLGDVVYLSGLMYTAREGVYMRALEDRANIPMELPAQSAANFHCSPAARINADGSF
DMGAVTATASFRFAKWLPEWMAKTGAKLIVGKGGMTSKDYKEYFVPNGAVYLSTVGYGTGALLGRGVENVEAVHWNEELG
IAQAMWVLKCNRMGPFIVASDMNGDCLFERENAKIAENVARVYEGTKPATLKRYGESDDRTDEVI

Specific function: Unknown

COG id: COG1838

COG function: function code C; Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I fumarase family [H]

Homologues:

Organism=Escherichia coli, GI1789443, Length=186, Percent_Identity=35.4838709677419, Blast_Score=110, Evalue=8e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004647 [H]

Pfam domain/function: PF05683 Fumerase_C [H]

EC number: =4.2.1.32 [H]

Molecular weight: Translated: 24645; Mature: 24514

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPTPNKPREITLSTTPSAEAIADLRLGDVVYLSGLMYTAREGVYMRALEDRANIPMELP
CCCCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEHHHHCCCCEECC
AQSAANFHCSPAARINADGSFDMGAVTATASFRFAKWLPEWMAKTGAKLIVGKGGMTSKD
CCCCCCCCCCCCCEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
YKEYFVPNGAVYLSTVGYGTGALLGRGVENVEAVHWNEELGIAQAMWVLKCNRMGPFIVA
HHHHHCCCCEEEEEECCCCCHHHHHCCCCCCEEEEECCCCCHHHHHHHHEECCCCCEEEE
SDMNGDCLFERENAKIAENVARVYEGTKPATLKRYGESDDRTDEVI
ECCCCCEEEECCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SPTPNKPREITLSTTPSAEAIADLRLGDVVYLSGLMYTAREGVYMRALEDRANIPMELP
CCCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEHHHHCCCCEECC
AQSAANFHCSPAARINADGSFDMGAVTATASFRFAKWLPEWMAKTGAKLIVGKGGMTSKD
CCCCCCCCCCCCCEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
YKEYFVPNGAVYLSTVGYGTGALLGRGVENVEAVHWNEELGIAQAMWVLKCNRMGPFIVA
HHHHHCCCCEEEEEECCCCCHHHHHCCCCCCEEEEECCCCCHHHHHHHHEECCCCCEEEE
SDMNGDCLFERENAKIAENVARVYEGTKPATLKRYGESDDRTDEVI
ECCCCCEEEECCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]