| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89056448
Identifier: 89056448
GI number: 89056448
Start: 4056405
End: 4056722
Strand: Direct
Name: 89056448
Synonym: Jann_3957
Alternate gene names: NA
Gene position: 4056405-4056722 (Clockwise)
Preceding gene: 89056447
Following gene: 89056453
Centisome position: 93.94
GC content: 61.01
Gene sequence:
>318_bases ATGAGCCAACCTGTTCCGCCTCCAGATTTCCCACACCTCATGCATGTTATTGCGTCTGCGCAGGTTCCTCGTCTCAGCCT GGCGCCGACCCAGTGCATCATCGTCGCCGACAGCCCCACTCTCTCGGTCGACGATCAACTGCGCTTCCAGAGGGTGCGCG CCGCCAGAACCGTGAGGGCGCTTACCCTGCTCCTCGGCAAGCTGCGACCGGCCATGACGACGGAACCCGGGCATCGTTAT CTTATTGAGTTTGATGCGGAGGCCATCCCGAACGACGTGTCCGCAAGCTACGCCTTTCAACGCATCGAGGACGTCTGA
Upstream 100 bases:
>100_bases GCGGACGGAATGGTACAGGTTTGGCTATAGGGAAGGCGGCGGCCACTGCCCCAAGGCCGGACGGTTACCAGACCAGCCGC GATGCTGTTAAGCTGGAGCG
Downstream 100 bases:
>100_bases GCAGAGAGAAGAGGCTACCCCTTCTTCCGCCCCTTCTCCAACCGGGCAAACAGCCTGCTCAGCCCAAAACACACGATGAA GTAGAAGGCTGCCGTGGTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 105; Mature: 104
Protein sequence:
>105_residues MSQPVPPPDFPHLMHVIASAQVPRLSLAPTQCIIVADSPTLSVDDQLRFQRVRAARTVRALTLLLGKLRPAMTTEPGHRY LIEFDAEAIPNDVSASYAFQRIEDV
Sequences:
>Translated_105_residues MSQPVPPPDFPHLMHVIASAQVPRLSLAPTQCIIVADSPTLSVDDQLRFQRVRAARTVRALTLLLGKLRPAMTTEPGHRY LIEFDAEAIPNDVSASYAFQRIEDV >Mature_104_residues SQPVPPPDFPHLMHVIASAQVPRLSLAPTQCIIVADSPTLSVDDQLRFQRVRAARTVRALTLLLGKLRPAMTTEPGHRYL IEFDAEAIPNDVSASYAFQRIEDV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11648; Mature: 11516
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQPVPPPDFPHLMHVIASAQVPRLSLAPTQCIIVADSPTLSVDDQLRFQRVRAARTVRA CCCCCCCCCHHHHHHHHHHCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH LTLLLGKLRPAMTTEPGHRYLIEFDAEAIPNDVSASYAFQRIEDV HHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure SQPVPPPDFPHLMHVIASAQVPRLSLAPTQCIIVADSPTLSVDDQLRFQRVRAARTVRA CCCCCCCCHHHHHHHHHHCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH LTLLLGKLRPAMTTEPGHRYLIEFDAEAIPNDVSASYAFQRIEDV HHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA