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The map label for this gene is yeaM [H]

Identifier: 89056222

GI number: 89056222

Start: 3813726

End: 3814487

Strand: Direct

Name: yeaM [H]

Synonym: Jann_3731

Alternate gene names: 89056222

Gene position: 3813726-3814487 (Clockwise)

Preceding gene: 89056219

Following gene: 89056223

Centisome position: 88.32

GC content: 51.44

Gene sequence:

>762_bases
GTGTTGGCACCTTCGTCAGCGGACACGCTGCAAGGGTTGCCGTATGAAGTTGTCAGCTATCGAAAAACCTACGAAAGTGG
GTATCGGTCAGATTGGCATAGCCACCCGCGACACCAAATCATCTACTCTGTGTCGGGCTTGATGATGACCGATACAGAAG
GTGTCAGATGGGCCGTGCCTTCCGGCTTTGGACTGATTGTACCGGCAGGCATCGCACACACCACGAAGATGATTGGCGAT
GTCAGTATTGAGACCCTCTATGTCAGCCCCTCTTCAAGAGGAAGGTCAGCCTTTGAAAGCTGTCGAGTGGTCAGTATCTC
AGCAATGCTTGCTTCATTGATCTCAGAGCTCTGTCGCGAGGAATTGAGGGACCGGAACAGCAGGAAGGCATTCCATCTAC
GGCAACTCATCTTTCTTGAATTGTCGGATGCACCGACATCACATTTGGCTGTGAAATATCCCGTTGACCCACAACTACGG
CGGGTCTGCGACGCGTTGATCGCCGATCCTGCGAATAGCTGGACGATTGATCAATGGGCTTTCGAGATCGGAAAGAGCCG
ACGGTCTTTCACGCGGGCTTTTTACTCTCAAACTGATCAGACGTTTCGGCAATGGACGCAGCGACTACGTTGTCAATTGG
CTCTACAGAAACGGGCAGAGGGACAGTCACTTGAGCGCATTGCTCGTGATCTCGGCTATGGCAGTAGATATTCTCTCGAA
GCGATGATGCAAAAACTCATCATGGTTGAGGAAATCAACTGA

Upstream 100 bases:

>100_bases
TCTGGGTCATACATTCTCCTTGCCGAGATACAGTTTACCTTGTCATTTTTGGCAAAAGGGGCCAGATATTTGTCAAATGG
GCCAAAATCAGAAACACCCT

Downstream 100 bases:

>100_bases
TCGCTTCAAAAGCGGCCATTGGCGTAGACGCAGCGAAGGCTCGCTTTGTCCCGCAGAGCGGACCTTCTAACGCCCAAAAT
GCTGCGTGCCTGCTCCGACG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MLAPSSADTLQGLPYEVVSYRKTYESGYRSDWHSHPRHQIIYSVSGLMMTDTEGVRWAVPSGFGLIVPAGIAHTTKMIGD
VSIETLYVSPSSRGRSAFESCRVVSISAMLASLISELCREELRDRNSRKAFHLRQLIFLELSDAPTSHLAVKYPVDPQLR
RVCDALIADPANSWTIDQWAFEIGKSRRSFTRAFYSQTDQTFRQWTQRLRCQLALQKRAEGQSLERIARDLGYGSRYSLE
AMMQKLIMVEEIN

Sequences:

>Translated_253_residues
MLAPSSADTLQGLPYEVVSYRKTYESGYRSDWHSHPRHQIIYSVSGLMMTDTEGVRWAVPSGFGLIVPAGIAHTTKMIGD
VSIETLYVSPSSRGRSAFESCRVVSISAMLASLISELCREELRDRNSRKAFHLRQLIFLELSDAPTSHLAVKYPVDPQLR
RVCDALIADPANSWTIDQWAFEIGKSRRSFTRAFYSQTDQTFRQWTQRLRCQLALQKRAEGQSLERIARDLGYGSRYSLE
AMMQKLIMVEEIN
>Mature_253_residues
MLAPSSADTLQGLPYEVVSYRKTYESGYRSDWHSHPRHQIIYSVSGLMMTDTEGVRWAVPSGFGLIVPAGIAHTTKMIGD
VSIETLYVSPSSRGRSAFESCRVVSISAMLASLISELCREELRDRNSRKAFHLRQLIFLELSDAPTSHLAVKYPVDPQLR
RVCDALIADPANSWTIDQWAFEIGKSRRSFTRAFYSQTDQTFRQWTQRLRCQLALQKRAEGQSLERIARDLGYGSRYSLE
AMMQKLIMVEEIN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=216, Percent_Identity=26.3888888888889, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28790; Mature: 28790

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAPSSADTLQGLPYEVVSYRKTYESGYRSDWHSHPRHQIIYSVSGLMMTDTEGVRWAVP
CCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHEEECCEEEECCCCCEEECC
SGFGLIVPAGIAHTTKMIGDVSIETLYVSPSSRGRSAFESCRVVSISAMLASLISELCRE
CCCCEEEECCHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ELRDRNSRKAFHLRQLIFLELSDAPTSHLAVKYPVDPQLRRVCDALIADPANSWTIDQWA
HHHCCCCHHHHHHHHHHHEEECCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHH
FEIGKSRRSFTRAFYSQTDQTFRQWTQRLRCQLALQKRAEGQSLERIARDLGYGSRYSLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHH
AMMQKLIMVEEIN
HHHHHHHHHHCCC
>Mature Secondary Structure
MLAPSSADTLQGLPYEVVSYRKTYESGYRSDWHSHPRHQIIYSVSGLMMTDTEGVRWAVP
CCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHEEECCEEEECCCCCEEECC
SGFGLIVPAGIAHTTKMIGDVSIETLYVSPSSRGRSAFESCRVVSISAMLASLISELCRE
CCCCEEEECCHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ELRDRNSRKAFHLRQLIFLELSDAPTSHLAVKYPVDPQLRRVCDALIADPANSWTIDQWA
HHHCCCCHHHHHHHHHHHEEECCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHH
FEIGKSRRSFTRAFYSQTDQTFRQWTQRLRCQLALQKRAEGQSLERIARDLGYGSRYSLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHH
AMMQKLIMVEEIN
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]