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The map label for this gene is glxA [H]

Identifier: 89056203

GI number: 89056203

Start: 3796575

End: 3797585

Strand: Direct

Name: glxA [H]

Synonym: Jann_3712

Alternate gene names: 89056203

Gene position: 3796575-3797585 (Clockwise)

Preceding gene: 89056195

Following gene: 89056206

Centisome position: 87.92

GC content: 58.85

Gene sequence:

>1011_bases
ATGAGCATCAAAACAACCGTGATCGGATCACCACTCGCCGGAACGTCTGTTCTGTTTTGCATCCTCGACGTCCTCGCGTC
CGTAGGGCGAGACTGGGAGATGTTGCATGGGCTGCCTGCTCAGGTGCCGGTCTTCCAAGTCAGCCTCAGAACCGCTGACG
GCGCGCCCTATTGGGATGTGAACGGACGCAAAATTACGCCCGACGCAAGGCTCGATGAAGACCCTGCACCGGACCTCATC
ATCGTGCCGGACATGCACTTTGATCCCAACGCCGGGTTTCCCGAGGACTATCGAAAGATGGCGAACTGGCTCGTCGCGGC
GTATGAGCGCGGCGCCATCGTGACGTCCGTCTGTTCCGGGGCGGTTCTGCTGGGTGCGGCTGGGTTGCTCGACGGCAAGG
AGGCCACCACACATTGGGGCTATGCGGAAATGCTAGGCCGCAATTTCCCCGACGTGAAGGTTTGTCGAGAACGCATCTTG
GTGCCCGCCGGTGAGGGCCATAGGGTCGTGACCGCAGGCGGCGTCTCGGCTTGGGCCGATTTGATGCTCTATCTCATTGC
TCGGTATGCAGGCACAGACGAAGCCCGGCGCATTGCCAAGATCTACCTGATCGACCCGCACAGCGAAGGGCAGTTGACCT
ATGCCTCGCTTACGTCGGGTCGCCAACACGACGACCAATTGATTGCAAAGGCCCAAGTTTGGGCTGCACAGAACTACGAT
GCATCAAGTCCGGTTGCTGCCATGGCCGAACAGGCCCACATGACTGAGCGTGGTTTTCTGCGTCGGTTCAAGAAGGCAAC
GGGACAGGCCCCGACGGATTACATTCAGACTCTCCGGATCGAAGAAGCAAAGCAACTGCTGGAAACGACCGCCATGCCAA
TCGAGGATATATCGACCGAGGTCGGTTATTCCGAGCCGTCAAGTTTCCGCGCCGCATTTCGAAAGCGCGTTGGGATATCG
GCATCTGCCTATCGCAAGAAATGGCACGCCTTGGCGCCGACAGGGTTATGA

Upstream 100 bases:

>100_bases
TGTCCTGAACGTCGTGATGGACCACGCCCCCGAGTCGCGTTAGAAGAAGAAAGGAAGAAACCGGTGGTTATCGGACCCAG
ATTAGGGAAAATTCCCCTGC

Downstream 100 bases:

>100_bases
ACCACCGTTCGTGTCCACCCCGCGTTCTTTCATATCCAATTGAAACCCACGCAGCTTCTCCGGTGTCGCACTATCCGGCG
AATGGCCCAGATATCGCGTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MSIKTTVIGSPLAGTSVLFCILDVLASVGRDWEMLHGLPAQVPVFQVSLRTADGAPYWDVNGRKITPDARLDEDPAPDLI
IVPDMHFDPNAGFPEDYRKMANWLVAAYERGAIVTSVCSGAVLLGAAGLLDGKEATTHWGYAEMLGRNFPDVKVCRERIL
VPAGEGHRVVTAGGVSAWADLMLYLIARYAGTDEARRIAKIYLIDPHSEGQLTYASLTSGRQHDDQLIAKAQVWAAQNYD
ASSPVAAMAEQAHMTERGFLRRFKKATGQAPTDYIQTLRIEEAKQLLETTAMPIEDISTEVGYSEPSSFRAAFRKRVGIS
ASAYRKKWHALAPTGL

Sequences:

>Translated_336_residues
MSIKTTVIGSPLAGTSVLFCILDVLASVGRDWEMLHGLPAQVPVFQVSLRTADGAPYWDVNGRKITPDARLDEDPAPDLI
IVPDMHFDPNAGFPEDYRKMANWLVAAYERGAIVTSVCSGAVLLGAAGLLDGKEATTHWGYAEMLGRNFPDVKVCRERIL
VPAGEGHRVVTAGGVSAWADLMLYLIARYAGTDEARRIAKIYLIDPHSEGQLTYASLTSGRQHDDQLIAKAQVWAAQNYD
ASSPVAAMAEQAHMTERGFLRRFKKATGQAPTDYIQTLRIEEAKQLLETTAMPIEDISTEVGYSEPSSFRAAFRKRVGIS
ASAYRKKWHALAPTGL
>Mature_335_residues
SIKTTVIGSPLAGTSVLFCILDVLASVGRDWEMLHGLPAQVPVFQVSLRTADGAPYWDVNGRKITPDARLDEDPAPDLII
VPDMHFDPNAGFPEDYRKMANWLVAAYERGAIVTSVCSGAVLLGAAGLLDGKEATTHWGYAEMLGRNFPDVKVCRERILV
PAGEGHRVVTAGGVSAWADLMLYLIARYAGTDEARRIAKIYLIDPHSEGQLTYASLTSGRQHDDQLIAKAQVWAAQNYDA
SSPVAAMAEQAHMTERGFLRRFKKATGQAPTDYIQTLRIEEAKQLLETTAMPIEDISTEVGYSEPSSFRAAFRKRVGISA
SAYRKKWHALAPTGL

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36720; Mature: 36589

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKTTVIGSPLAGTSVLFCILDVLASVGRDWEMLHGLPAQVPVFQVSLRTADGAPYWDV
CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEEECCCCCEECC
NGRKITPDARLDEDPAPDLIIVPDMHFDPNAGFPEDYRKMANWLVAAYERGAIVTSVCSG
CCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCC
AVLLGAAGLLDGKEATTHWGYAEMLGRNFPDVKVCRERILVPAGEGHRVVTAGGVSAWAD
HHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEECCHHHHHH
LMLYLIARYAGTDEARRIAKIYLIDPHSEGQLTYASLTSGRQHDDQLIAKAQVWAAQNYD
HHHHHHHHHCCCHHHHEEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC
ASSPVAAMAEQAHMTERGFLRRFKKATGQAPTDYIQTLRIEEAKQLLETTAMPIEDISTE
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
VGYSEPSSFRAAFRKRVGISASAYRKKWHALAPTGL
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SIKTTVIGSPLAGTSVLFCILDVLASVGRDWEMLHGLPAQVPVFQVSLRTADGAPYWDV
CCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEEECCCCCEECC
NGRKITPDARLDEDPAPDLIIVPDMHFDPNAGFPEDYRKMANWLVAAYERGAIVTSVCSG
CCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCC
AVLLGAAGLLDGKEATTHWGYAEMLGRNFPDVKVCRERILVPAGEGHRVVTAGGVSAWAD
HHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEECCHHHHHH
LMLYLIARYAGTDEARRIAKIYLIDPHSEGQLTYASLTSGRQHDDQLIAKAQVWAAQNYD
HHHHHHHHHCCCHHHHEEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC
ASSPVAAMAEQAHMTERGFLRRFKKATGQAPTDYIQTLRIEEAKQLLETTAMPIEDISTE
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
VGYSEPSSFRAAFRKRVGISASAYRKKWHALAPTGL
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]