| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89056023
Identifier: 89056023
GI number: 89056023
Start: 3591485
End: 3591808
Strand: Direct
Name: 89056023
Synonym: Jann_3532
Alternate gene names: NA
Gene position: 3591485-3591808 (Clockwise)
Preceding gene: 89056022
Following gene: 89056024
Centisome position: 83.18
GC content: 55.25
Gene sequence:
>324_bases ATGACAATGACAACAGTTGCGCAAGTTCAAAGGAGCATCTCGAATGCACTTGGTGACCTGTATCGGATCGAACGCCATTC GGTCCAGATGACCCCGGCCCAGAAGAGAGCGGTGCAGGATACTATTCGGGCGTTGGAGGATGAGTATATCGCATTGCGCG GGTCCCCGGAGATTCAGAGCTACGCGGCCATCACACAACGGATCAACACAGCCAGAACCGACCTCATCCGGATCAAGGAT GAACGCAAACAACTCGAAAACCTGTTCGCCTCCGCGGCCAAGATTCTCGGGTCGACGACGCGGCTTCTGGCATTGTTGCC TTAG
Upstream 100 bases:
>100_bases TGGAAGAGGATTTGCCGTTCGAAGACACGTTTGATGCCTTTGTAACGGCACTAGAGAACGTCGACGCATTAATTGACGCG CTAAGCTGAGGAGATTCCAA
Downstream 100 bases:
>100_bases CAGGGTCGGCGCGATGAGACGGTATTCGCTCACCGATTGCCGAAGGGTCGACGAAGAAGACGCGTCGGGGCGGCACAGGG TCCGCGCCCCGCCAAAGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 107; Mature: 106
Protein sequence:
>107_residues MTMTTVAQVQRSISNALGDLYRIERHSVQMTPAQKRAVQDTIRALEDEYIALRGSPEIQSYAAITQRINTARTDLIRIKD ERKQLENLFASAAKILGSTTRLLALLP
Sequences:
>Translated_107_residues MTMTTVAQVQRSISNALGDLYRIERHSVQMTPAQKRAVQDTIRALEDEYIALRGSPEIQSYAAITQRINTARTDLIRIKD ERKQLENLFASAAKILGSTTRLLALLP >Mature_106_residues TMTTVAQVQRSISNALGDLYRIERHSVQMTPAQKRAVQDTIRALEDEYIALRGSPEIQSYAAITQRINTARTDLIRIKDE RKQLENLFASAAKILGSTTRLLALLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12027; Mature: 11896
Theoretical pI: Translated: 10.34; Mature: 10.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMTTVAQVQRSISNALGDLYRIERHSVQMTPAQKRAVQDTIRALEDEYIALRGSPEIQS CCCHHHHHHHHHHHHHHHHHHHHHHHCEECCHHHHHHHHHHHHHHHHHHEEECCCCCHHH YAAITQRINTARTDLIRIKDERKQLENLFASAAKILGSTTRLLALLP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC >Mature Secondary Structure TMTTVAQVQRSISNALGDLYRIERHSVQMTPAQKRAVQDTIRALEDEYIALRGSPEIQS CCHHHHHHHHHHHHHHHHHHHHHHHCEECCHHHHHHHHHHHHHHHHHHEEECCCCCHHH YAAITQRINTARTDLIRIKDERKQLENLFASAAKILGSTTRLLALLP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA