Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

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The map label for this gene is 89055779

Identifier: 89055779

GI number: 89055779

Start: 3341245

End: 3341661

Strand: Direct

Name: 89055779

Synonym: Jann_3288

Alternate gene names: NA

Gene position: 3341245-3341661 (Clockwise)

Preceding gene: 89055778

Following gene: 89055783

Centisome position: 77.38

GC content: 54.44

Gene sequence:

>417_bases
ATGCATCGGGCCGATACCAAACCCATAAGAAAACAGTACCATTCTCGCCAGGTCGGGACGGATCGGCACATATGGGATGT
GCACCAGCTCATACGCGCTTCACGTGACCTCAAAAAGCAGATGGTTTCGGTGAACGATATTGCCGAGGCGGATGAGAATT
GGTGGTATGGTGATGCCGATGACATACCAACACCGCGATCGATCGCGGCTCACCTCGCTTTGGTCGACGAAGTCGATCCA
CTACATCCTGTCATTCTGTGCGCTGAAGGTCGTCTGATGGATGGTATGCATCGTGTTGTGAAAGCAATAGCGGAAGGCAG
AACGCACATCCCGGCGGTGCGTTTTGCCAAGACGCCCGCCCCCGACTTCGTGAACCTGCCCCTTGATGATCTGCCATACC
CGGACGACTTTGTTTGA

Upstream 100 bases:

>100_bases
GAGCCCAGAGTATCGGATGCTGCATGGTGAACGAGTGTCGGCCTACGAGAATCGAAAGGGTTCGCTAGGAGCCCGTCCAA
CACTTTGCTATCTAGTGGGG

Downstream 100 bases:

>100_bases
TCGGATGCAGCGTCAGACTAGCGGAAAGTCGCAACGCAGTCGCTTGATAGCCAGGCGTAAATGGTTGCTTTGTCCCGCTA
AGCGGACCTTTTGCTATTTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MHRADTKPIRKQYHSRQVGTDRHIWDVHQLIRASRDLKKQMVSVNDIAEADENWWYGDADDIPTPRSIAAHLALVDEVDP
LHPVILCAEGRLMDGMHRVVKAIAEGRTHIPAVRFAKTPAPDFVNLPLDDLPYPDDFV

Sequences:

>Translated_138_residues
MHRADTKPIRKQYHSRQVGTDRHIWDVHQLIRASRDLKKQMVSVNDIAEADENWWYGDADDIPTPRSIAAHLALVDEVDP
LHPVILCAEGRLMDGMHRVVKAIAEGRTHIPAVRFAKTPAPDFVNLPLDDLPYPDDFV
>Mature_138_residues
MHRADTKPIRKQYHSRQVGTDRHIWDVHQLIRASRDLKKQMVSVNDIAEADENWWYGDADDIPTPRSIAAHLALVDEVDP
LHPVILCAEGRLMDGMHRVVKAIAEGRTHIPAVRFAKTPAPDFVNLPLDDLPYPDDFV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15719; Mature: 15719

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRADTKPIRKQYHSRQVGTDRHIWDVHQLIRASRDLKKQMVSVNDIAEADENWWYGDAD
CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DIPTPRSIAAHLALVDEVDPLHPVILCAEGRLMDGMHRVVKAIAEGRTHIPAVRFAKTPA
CCCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCC
PDFVNLPLDDLPYPDDFV
CCEECCCCCCCCCCCCCC
>Mature Secondary Structure
MHRADTKPIRKQYHSRQVGTDRHIWDVHQLIRASRDLKKQMVSVNDIAEADENWWYGDAD
CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DIPTPRSIAAHLALVDEVDPLHPVILCAEGRLMDGMHRVVKAIAEGRTHIPAVRFAKTPA
CCCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCC
PDFVNLPLDDLPYPDDFV
CCEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA