| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89055754
Identifier: 89055754
GI number: 89055754
Start: 3316047
End: 3317474
Strand: Direct
Name: 89055754
Synonym: Jann_3263
Alternate gene names: NA
Gene position: 3316047-3317474 (Clockwise)
Preceding gene: 89055753
Following gene: 89055756
Centisome position: 76.8
GC content: 65.34
Gene sequence:
>1428_bases GTGGCAGACACGTCTGATGAGAATGACCTGACGGCCAGCCACGGCGTGGTGCTGCGGGCCAGGAATGGCGATGTCATTCG CTACGATCCTTCGGGCCTCGTGCTGCGGCTGTCGGACCGTGTCGTCGAGGATCTCGCGTTGCGTCTGCCCAGCCGGGACA CGCCTGTTGCCACACCCGCCAATACAGCGGACCTGCCCGAAGGCATCGACGCATGGGACGCGCGGACCGAGGGCGACTGG ATCACCTTCACCGCGCGCCTGCCCGGCGACCAGGGCGTGCGCGGCTTTCGCGCCCATATCGACGGTGGGGATATCATAGC CGAGGCCAATGGCCCGGTCCTGGGGATACTTGGCATCGGTGGTGCCAGTGCGGCCCTCGCCACACGCATACCCGCCCGCT ACCCGCAACATATCGTTGCCCCCGCCGATGACATCGGCGCAGTCGGTCACGCCGGGATTGAATTAGCAAAGTCTTGCAAC CGGTTAGAGCACTTGCGTGAAGTGACACATGAAGCCCTTGTAGCGCAATCTATCCTGGATTGGCGCATGGCGGACTTCGG TCCCCTGCCGCTTTTCGTGACACGGGTAGAGACAGACAGTTCCACCACCACAGCGGATCTTGCCTGTGGAAAAGCTGTGG AGAACTTGTTGATTGCGGCAGCGAATTTGCGCGCGGCGGCCGACCTCATGGGCAAGTCTGCGAAGGTCTTGGCCGTCACG CTGGACTTCGCGCTGGAGGATCATTCCGACACCGCGCAGGCCTACCGCGACGGTATGCTCGCGGTGATGGAGGCGGTCAG CAGCGGCCTCTGGTCCCTCGGGTTCGACCGCCCGCTCTTCGTGTCGCGCTTCTATTCCGGCCTGCCCGACGTGGCCCCCG GCCCGGCTTTGGACGGTCAGTGGGAGCTGAGCTGGTCCCATGGCGACCACCGTCTGATCCACTCCGCCCCTGCCTATATG TTCGCGCTCGATGAGTACGACCGCCCCACCGACATCGCCCGCACGCAGCAGGCGGAAATGACCGCCTCGGCCATTGCGGA GGCCGCCACATGGAAGTGCCCGACCCTGCATTTGGCCGAGCTGGAAGGCAAAACCCTGCGCGTCGCCGCGCGGGCCGCGG GGCCGTTGGTTCTGGACGATGCGGATCCCTTCCTGGCAGGCGCACACGGTGGTTTCCACCTGACGGGCTGTGAGAATGGG GCAGAGATCAACGCTGTTTGCATTGCCGAGGACGACCCGCAAAGCCTTGTTCTGCACTTGTCGAAGGTGCCCGAAGGCGC GGATCTGCGCCTCGCCTATGCCTGTGCGGGCACGCGGAATGTGGGGGCCCTGCGCGACGATTGGACCCTCACCAGCGCCA CCGGGGGCGCGCTGCACCGATGGGCCTTGCCCGCCCATCTGCCCATCACCGGCGGACGTCATGCTTGA
Upstream 100 bases:
>100_bases CAGCGCAGGGTCTTTGCAATTCAATCGCGCGTCCTGACATGTCAGGGCTTGGCGCGGCGCACGGGCGTGGCTAGCCTGCG CTGAACAAAGGGGGCCGCGC
Downstream 100 bases:
>100_bases GCTGGACACCAACCTGCCGCGCGGCACCTTGTGCGCCGCGCACCCCAGCGCGGTCTCAAGCGATCTGACGGGCGCGCTCT GGTGGCACGGATCGGCGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 475; Mature: 474
Protein sequence:
>475_residues MADTSDENDLTASHGVVLRARNGDVIRYDPSGLVLRLSDRVVEDLALRLPSRDTPVATPANTADLPEGIDAWDARTEGDW ITFTARLPGDQGVRGFRAHIDGGDIIAEANGPVLGILGIGGASAALATRIPARYPQHIVAPADDIGAVGHAGIELAKSCN RLEHLREVTHEALVAQSILDWRMADFGPLPLFVTRVETDSSTTTADLACGKAVENLLIAAANLRAAADLMGKSAKVLAVT LDFALEDHSDTAQAYRDGMLAVMEAVSSGLWSLGFDRPLFVSRFYSGLPDVAPGPALDGQWELSWSHGDHRLIHSAPAYM FALDEYDRPTDIARTQQAEMTASAIAEAATWKCPTLHLAELEGKTLRVAARAAGPLVLDDADPFLAGAHGGFHLTGCENG AEINAVCIAEDDPQSLVLHLSKVPEGADLRLAYACAGTRNVGALRDDWTLTSATGGALHRWALPAHLPITGGRHA
Sequences:
>Translated_475_residues MADTSDENDLTASHGVVLRARNGDVIRYDPSGLVLRLSDRVVEDLALRLPSRDTPVATPANTADLPEGIDAWDARTEGDW ITFTARLPGDQGVRGFRAHIDGGDIIAEANGPVLGILGIGGASAALATRIPARYPQHIVAPADDIGAVGHAGIELAKSCN RLEHLREVTHEALVAQSILDWRMADFGPLPLFVTRVETDSSTTTADLACGKAVENLLIAAANLRAAADLMGKSAKVLAVT LDFALEDHSDTAQAYRDGMLAVMEAVSSGLWSLGFDRPLFVSRFYSGLPDVAPGPALDGQWELSWSHGDHRLIHSAPAYM FALDEYDRPTDIARTQQAEMTASAIAEAATWKCPTLHLAELEGKTLRVAARAAGPLVLDDADPFLAGAHGGFHLTGCENG AEINAVCIAEDDPQSLVLHLSKVPEGADLRLAYACAGTRNVGALRDDWTLTSATGGALHRWALPAHLPITGGRHA >Mature_474_residues ADTSDENDLTASHGVVLRARNGDVIRYDPSGLVLRLSDRVVEDLALRLPSRDTPVATPANTADLPEGIDAWDARTEGDWI TFTARLPGDQGVRGFRAHIDGGDIIAEANGPVLGILGIGGASAALATRIPARYPQHIVAPADDIGAVGHAGIELAKSCNR LEHLREVTHEALVAQSILDWRMADFGPLPLFVTRVETDSSTTTADLACGKAVENLLIAAANLRAAADLMGKSAKVLAVTL DFALEDHSDTAQAYRDGMLAVMEAVSSGLWSLGFDRPLFVSRFYSGLPDVAPGPALDGQWELSWSHGDHRLIHSAPAYMF ALDEYDRPTDIARTQQAEMTASAIAEAATWKCPTLHLAELEGKTLRVAARAAGPLVLDDADPFLAGAHGGFHLTGCENGA EINAVCIAEDDPQSLVLHLSKVPEGADLRLAYACAGTRNVGALRDDWTLTSATGGALHRWALPAHLPITGGRHA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50357; Mature: 50226
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADTSDENDLTASHGVVLRARNGDVIRYDPSGLVLRLSDRVVEDLALRLPSRDTPVATPA CCCCCCCCCCCCCCCEEEEECCCCEEEECCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCC NTADLPEGIDAWDARTEGDWITFTARLPGDQGVRGFRAHIDGGDIIAEANGPVLGILGIG CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEECCCCEEEEEECC GASAALATRIPARYPQHIVAPADDIGAVGHAGIELAKSCNRLEHLREVTHEALVAQSILD CCHHHHHHHCCCCCCCCEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WRMADFGPLPLFVTRVETDSSTTTADLACGKAVENLLIAAANLRAAADLMGKSAKVLAVT HHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE LDFALEDHSDTAQAYRDGMLAVMEAVSSGLWSLGFDRPLFVSRFYSGLPDVAPGPALDGQ EEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCE WELSWSHGDHRLIHSAPAYMFALDEYDRPTDIARTQQAEMTASAIAEAATWKCPTLHLAE EEEEECCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE LEGKTLRVAARAAGPLVLDDADPFLAGAHGGFHLTGCENGAEINAVCIAEDDPQSLVLHL CCCCEEEEEECCCCCEEEECCCCCEEECCCCEEEECCCCCCEEEEEEEECCCHHHHHHHH SKVPEGADLRLAYACAGTRNVGALRDDWTLTSATGGALHRWALPAHLPITGGRHA HCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCCCC >Mature Secondary Structure ADTSDENDLTASHGVVLRARNGDVIRYDPSGLVLRLSDRVVEDLALRLPSRDTPVATPA CCCCCCCCCCCCCCEEEEECCCCEEEECCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCC NTADLPEGIDAWDARTEGDWITFTARLPGDQGVRGFRAHIDGGDIIAEANGPVLGILGIG CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEECCCCEEEEEECC GASAALATRIPARYPQHIVAPADDIGAVGHAGIELAKSCNRLEHLREVTHEALVAQSILD CCHHHHHHHCCCCCCCCEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WRMADFGPLPLFVTRVETDSSTTTADLACGKAVENLLIAAANLRAAADLMGKSAKVLAVT HHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE LDFALEDHSDTAQAYRDGMLAVMEAVSSGLWSLGFDRPLFVSRFYSGLPDVAPGPALDGQ EEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCE WELSWSHGDHRLIHSAPAYMFALDEYDRPTDIARTQQAEMTASAIAEAATWKCPTLHLAE EEEEECCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE LEGKTLRVAARAAGPLVLDDADPFLAGAHGGFHLTGCENGAEINAVCIAEDDPQSLVLHL CCCCEEEEEECCCCCEEEECCCCCEEECCCCEEEECCCCCCEEEEEEEECCCHHHHHHHH SKVPEGADLRLAYACAGTRNVGALRDDWTLTSATGGALHRWALPAHLPITGGRHA HCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA