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The map label for this gene is ycgM [H]

Identifier: 89055400

GI number: 89055400

Start: 2929584

End: 2930276

Strand: Direct

Name: ycgM [H]

Synonym: Jann_2909

Alternate gene names: 89055400

Gene position: 2929584-2930276 (Clockwise)

Preceding gene: 89055399

Following gene: 89055401

Centisome position: 67.85

GC content: 62.91

Gene sequence:

>693_bases
ATGGCTTATGTGTTTGACCCGATTGCGCCACCCTCGGTCGCCGTGGCCGGACTGACGGCGCATTTCCCGGTGCGCCGCAT
CTTCTGCGTCGGCAGAAATTATGCCGAGCACGCGCGTGAAATGGGCCACGATGACCGCGAACCACCGTTCTTCTTTACCA
AACCCGCTGATGCGCTGGTCGAAGATGGCGCGACTGTCCCCTACCCGCCCGGCACCGAGAACCTTCATTTCGAGGCTGAA
CTTGTGGTCGCTATCGGCACGCCCGGGCGCGCGATTGCCGAGGCCAATGCCCTGGATCACGTCTACGGATATGCTTGCGG
CAATGACCTAACCCGGCGCGACATTCAGACCGCGGCCAAGAAGGCCGGACGCCCGTGGGATATGGCGAAAGGCTTCGATC
TGTCCGCCGTCGTCGGGCCGATCCATCCCGTGTCAGAGGTCGGGCATCTGGAGCGCGGCCGCATCTCACTGACCCGCAAC
GGAGAGGTCCAGCAGACTGGCGATTTGGCGGATATGATCTGGTCGACGCCTGAAATCATCGCCTATCTCTCGGGCCTGGT
GGGCTTTGAAGCGGGTGATCTGATCATGACCGGAACACCCGCAGGGGTCGGCGCATTGGTGCCCGGCGACACGGCGGTGG
TTTCCATCGCCGGCCTGCCCGATTTGTCCGTCACCATAGGAGAGCCCGCATGA

Upstream 100 bases:

>100_bases
CAATGAGATCATGCAAGGCATGAGCCCTCAGGACTGGTATGAACAACTGACATGGATTTACAGATCCAACGGCTTACCGC
CGGATATGGGAGGAATTTGA

Downstream 100 bases:

>100_bases
GCCATGGTATGCAAGCCGAAGACAGCCCGGAATTACGCCAGCTTTACAAAGGGTTCAAGGGTCAATCTCTGATCCCCCTC
TGGACGCAGACCGGGAGTTT

Product: 5-carboxymethyl-2-hydroxymuconate delta-isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MAYVFDPIAPPSVAVAGLTAHFPVRRIFCVGRNYAEHAREMGHDDREPPFFFTKPADALVEDGATVPYPPGTENLHFEAE
LVVAIGTPGRAIAEANALDHVYGYACGNDLTRRDIQTAAKKAGRPWDMAKGFDLSAVVGPIHPVSEVGHLERGRISLTRN
GEVQQTGDLADMIWSTPEIIAYLSGLVGFEAGDLIMTGTPAGVGALVPGDTAVVSIAGLPDLSVTIGEPA

Sequences:

>Translated_230_residues
MAYVFDPIAPPSVAVAGLTAHFPVRRIFCVGRNYAEHAREMGHDDREPPFFFTKPADALVEDGATVPYPPGTENLHFEAE
LVVAIGTPGRAIAEANALDHVYGYACGNDLTRRDIQTAAKKAGRPWDMAKGFDLSAVVGPIHPVSEVGHLERGRISLTRN
GEVQQTGDLADMIWSTPEIIAYLSGLVGFEAGDLIMTGTPAGVGALVPGDTAVVSIAGLPDLSVTIGEPA
>Mature_229_residues
AYVFDPIAPPSVAVAGLTAHFPVRRIFCVGRNYAEHAREMGHDDREPPFFFTKPADALVEDGATVPYPPGTENLHFEAEL
VVAIGTPGRAIAEANALDHVYGYACGNDLTRRDIQTAAKKAGRPWDMAKGFDLSAVVGPIHPVSEVGHLERGRISLTRNG
EVQQTGDLADMIWSTPEIIAYLSGLVGFEAGDLIMTGTPAGVGALVPGDTAVVSIAGLPDLSVTIGEPA

Specific function: Unknown

COG id: COG0179

COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAH family [H]

Homologues:

Organism=Homo sapiens, GI215422413, Length=199, Percent_Identity=42.713567839196, Blast_Score=165, Evalue=3e-41,
Organism=Homo sapiens, GI13654274, Length=205, Percent_Identity=40.9756097560976, Blast_Score=163, Evalue=1e-40,
Organism=Homo sapiens, GI66348062, Length=195, Percent_Identity=42.5641025641026, Blast_Score=160, Evalue=8e-40,
Organism=Homo sapiens, GI156231349, Length=182, Percent_Identity=34.6153846153846, Blast_Score=117, Evalue=7e-27,
Organism=Homo sapiens, GI40786394, Length=182, Percent_Identity=34.0659340659341, Blast_Score=114, Evalue=5e-26,
Organism=Escherichia coli, GI1787428, Length=198, Percent_Identity=40.9090909090909, Blast_Score=147, Evalue=7e-37,
Organism=Caenorhabditis elegans, GI17557057, Length=185, Percent_Identity=38.9189189189189, Blast_Score=145, Evalue=2e-35,
Organism=Saccharomyces cerevisiae, GI6324161, Length=219, Percent_Identity=34.2465753424658, Blast_Score=119, Evalue=4e-28,
Organism=Drosophila melanogaster, GI28571789, Length=202, Percent_Identity=33.6633663366337, Blast_Score=123, Evalue=8e-29,
Organism=Drosophila melanogaster, GI28572127, Length=213, Percent_Identity=31.924882629108, Blast_Score=104, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24663695, Length=205, Percent_Identity=27.3170731707317, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002529
- InterPro:   IPR011234 [H]

Pfam domain/function: PF01557 FAA_hydrolase [H]

EC number: NA

Molecular weight: Translated: 24272; Mature: 24141

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYVFDPIAPPSVAVAGLTAHFPVRRIFCVGRNYAEHAREMGHDDREPPFFFTKPADALV
CCEEECCCCCCCCEEECHHHHCHHHEEEECCCCHHHHHHHCCCCCCCCCEEEECCHHHHH
EDGATVPYPPGTENLHFEAELVVAIGTPGRAIAEANALDHVYGYACGNDLTRRDIQTAAK
HCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
KAGRPWDMAKGFDLSAVVGPIHPVSEVGHLERGRISLTRNGEVQQTGDLADMIWSTPEII
HCCCCCCCCCCCCCHHHHCCCCCHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHCCHHHH
AYLSGLVGFEAGDLIMTGTPAGVGALVPGDTAVVSIAGLPDLSVTIGEPA
HHHHHHHCCCCCCEEEECCCCCCCEECCCCCEEEEEECCCCCEEEECCCC
>Mature Secondary Structure 
AYVFDPIAPPSVAVAGLTAHFPVRRIFCVGRNYAEHAREMGHDDREPPFFFTKPADALV
CEEECCCCCCCCEEECHHHHCHHHEEEECCCCHHHHHHHCCCCCCCCCEEEECCHHHHH
EDGATVPYPPGTENLHFEAELVVAIGTPGRAIAEANALDHVYGYACGNDLTRRDIQTAAK
HCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
KAGRPWDMAKGFDLSAVVGPIHPVSEVGHLERGRISLTRNGEVQQTGDLADMIWSTPEII
HCCCCCCCCCCCCCHHHHCCCCCHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHCCHHHH
AYLSGLVGFEAGDLIMTGTPAGVGALVPGDTAVVSIAGLPDLSVTIGEPA
HHHHHHHCCCCCCEEEECCCCCCCEECCCCCEEEEEECCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 10806384 [H]