| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is walR [H]
Identifier: 89055186
GI number: 89055186
Start: 2706052
End: 2706612
Strand: Reverse
Name: walR [H]
Synonym: Jann_2695
Alternate gene names: 89055186
Gene position: 2706612-2706052 (Counterclockwise)
Preceding gene: 89055187
Following gene: 89055185
Centisome position: 62.68
GC content: 67.74
Gene sequence:
>561_bases ATGGGGCGGTCCATGCACAGTAAATGCACCGGGACCGGACCAATGGGAGGGTCGATGGCCCGGGCAGCCTTGGGAGGAGG GCTGGGAATGACGACATCGCATGACACAAGGGCCGGGATGGGCCAGGTGGGCGCGGGGGCGACAGATGGCGCGGGCGCTC CGGCGACATCCGGACCTGTCGGGCGCATCCTGATCGTGGAGGACGAGAGCAACATCCTTGAGGCGTTGAGCTTCATCCTC AGCCGTGCGGGGTGGGATGTGCGCGGCCACGGCAAGGGCGATGACGCCTTGGACGAGATCGCGCGGCTGTCGCCTGATAT GCTGGTCCTCGATGTGATGCTGCCGGGACGGTCGGGCTTTGACATTCTGGCGGATCTTCGCGCGCGCCCCGCCACGGCGG CGTTGCCCGTCCTGATGCTGACCGCCAAGGGGCAGACCAAGGACCGCGAGCAGGCCATGGCACTGGGGGCGAATGCCTTC CTGACCAAGCCGTTTTCCAACGCCGAGCTGCTGGAGACGGTCACGGCCATGCGCGCCGAGATGCCGGGCGGGGGGACCTG A
Upstream 100 bases:
>100_bases GCATCGGCGGCAGCGCGTCATTGCAGGCCCGGGCGACCGGCGCAGATCGGGCGCGCATCCGAGGCCGAGGTCGGTCAATC CACGCCAGACCATTGCGCGC
Downstream 100 bases:
>100_bases GCCGTGGTGCGCCGCCTGTTTCTGGAACGCCGGACCTACCGGCAGCACCGCCTGCAAGACGCGGCCCGGCTGCTGCCCTT TCTCGGCGCGATCCTGATCT
Product: response regulator receiver domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 186; Mature: 185
Protein sequence:
>186_residues MGRSMHSKCTGTGPMGGSMARAALGGGLGMTTSHDTRAGMGQVGAGATDGAGAPATSGPVGRILIVEDESNILEALSFIL SRAGWDVRGHGKGDDALDEIARLSPDMLVLDVMLPGRSGFDILADLRARPATAALPVLMLTAKGQTKDREQAMALGANAF LTKPFSNAELLETVTAMRAEMPGGGT
Sequences:
>Translated_186_residues MGRSMHSKCTGTGPMGGSMARAALGGGLGMTTSHDTRAGMGQVGAGATDGAGAPATSGPVGRILIVEDESNILEALSFIL SRAGWDVRGHGKGDDALDEIARLSPDMLVLDVMLPGRSGFDILADLRARPATAALPVLMLTAKGQTKDREQAMALGANAF LTKPFSNAELLETVTAMRAEMPGGGT >Mature_185_residues GRSMHSKCTGTGPMGGSMARAALGGGLGMTTSHDTRAGMGQVGAGATDGAGAPATSGPVGRILIVEDESNILEALSFILS RAGWDVRGHGKGDDALDEIARLSPDMLVLDVMLPGRSGFDILADLRARPATAALPVLMLTAKGQTKDREQAMALGANAFL TKPFSNAELLETVTAMRAEMPGGGT
Specific function: Member of the two-component regulatory system walK/walR that regulates genes involved in autolysis, biofilm formation and cell wall metabolism [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1786599, Length=116, Percent_Identity=38.7931034482759, Blast_Score=91, Evalue=4e-20, Organism=Escherichia coli, GI1790860, Length=115, Percent_Identity=36.5217391304348, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1789809, Length=129, Percent_Identity=32.5581395348837, Blast_Score=71, Evalue=4e-14, Organism=Escherichia coli, GI87082012, Length=115, Percent_Identity=38.2608695652174, Blast_Score=70, Evalue=6e-14, Organism=Escherichia coli, GI1786784, Length=116, Percent_Identity=37.9310344827586, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1788394, Length=122, Percent_Identity=33.6065573770492, Blast_Score=66, Evalue=1e-12, Organism=Escherichia coli, GI1788550, Length=111, Percent_Identity=30.6306306306306, Blast_Score=63, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 18966; Mature: 18835
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 6.5 %Met (Translated Protein) 7.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 5.9 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRSMHSKCTGTGPMGGSMARAALGGGLGMTTSHDTRAGMGQVGAGATDGAGAPATSGPV CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GRILIVEDESNILEALSFILSRAGWDVRGHGKGDDALDEIARLSPDMLVLDVMLPGRSGF EEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCH DILADLRARPATAALPVLMLTAKGQTKDREQAMALGANAFLTKPFSNAELLETVTAMRAE HHHHHHHCCCCHHHCEEEEEECCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHC MPGGGT CCCCCC >Mature Secondary Structure GRSMHSKCTGTGPMGGSMARAALGGGLGMTTSHDTRAGMGQVGAGATDGAGAPATSGPV CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GRILIVEDESNILEALSFILSRAGWDVRGHGKGDDALDEIARLSPDMLVLDVMLPGRSGF EEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCH DILADLRARPATAALPVLMLTAKGQTKDREQAMALGANAFLTKPFSNAELLETVTAMRAE HHHHHHHCCCCHHHCEEEEEECCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHC MPGGGT CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA