Click here to switch to the map view.

The map label for this gene is ydjG [H]

Identifier: 89055163

GI number: 89055163

Start: 2682827

End: 2683954

Strand: Direct

Name: ydjG [H]

Synonym: Jann_2672

Alternate gene names: 89055163

Gene position: 2682827-2683954 (Clockwise)

Preceding gene: 89055162

Following gene: 89055165

Centisome position: 62.13

GC content: 63.3

Gene sequence:

>1128_bases
ATGTCCGATACCTTCGACAGCACGCCCCAGACCGCCCGCCCGGAAGATGAGCATCGCTTCCCCTGCTCCAATTGCGGATC
GGATATGCGCTACGCGCCCACTGACGGCAAAATGATCTGTGATCACTGCGGCAATGAGGAGGCGATCGAGGTTGCCGACG
GCCCCTGGGGTGGCGGGGAAGGATTGGTCGAGAATGATTTTGAGGCGGCCCTGCGCGGGGAGGTCGCGGCTGCCGAAATG
GAGGAGACACGCGTTTCCGCCTGCCCGTCCTGCGGCGCACAGGTGCAGTTTGATGGCGCCACCCATTCCGAGGAATGTCC
CTTCTGCGCCACCCCCGTGGTGGCCGACACGGGCACCCATCGCCATATCAAACCCAAGGGGTTGATTCCGTTTCAACTGA
CGGAGCGGGACGCAAGCAAAGCCATGAACAATTGGCTCTCCGGCCTGTGGTTTGCACCCAACGGCCTGAAGCAATATGCC
CGCAAGGACAGCACACTCGATGGTATCTACGTGCCCTACTGGACCTATGACGCCGACACTGCCACCTCCTACCGGGGCCA
GCGCGGCACCGCCTATTATGTGACGGTGAAAGGCCCCGATGGCAAACCGCGGCAGGAACGGCGCATGCGCTGGACCCGCG
CCTCGGGCCGGGTCGCGCGCTTTTTCGACGACATTCTTGTGCTGGCCTCCAAATCCCTGCCCAAGCGCTACACGGACGCG
CTGGCGCCGTGGGACCTCAGCGCGCTGGCCGAATACAAGCCGGAGTTTCTGTCGGGCTTCCGGGCGGAGGGCTATACGGT
GGAGCTTGACGAAGGCATGGATGAGGCGCGCCGGATCATGGATGCGCAGATCCGCCGCGACATCTGCCGCGACATTGGCG
GGGACGCCCAGAAGATCGACGCCATGGATACCCATGTGGACGATGTGACCTTCAAACACGTGCTGCTGCCGGTCTGGATC
GCCGCCTACAAATACCGCGGCAAAAGCTTCCGGTTTGTCGTCAATGCCCAAAGCGGCAAGGTCCAGGGGGAGCGGCCCTA
TAGCTGGGGCAAGATCGCGCTGGCCGTCATCGCCGCCGTCGTGTTCGCAGGCGCGGTGTTCTACGGGCTAGAGGTCATGG
ACCGCTAG

Upstream 100 bases:

>100_bases
TCTGTAGGCGCGGCCACATATGGTTTTCCCTGCTTGATCCCGCCCGCGTCTCGCAAGACACTGCGGGTCTCACTCACCCT
TCGCAGAGACCCCTTCCCCC

Downstream 100 bases:

>100_bases
AGTGCCGTCCAGTCAACACACAGCCCGGCATGAACCGGGCTGTCGTATCAAGCTGCGGCCTGCGGTCAGGCCTGTGCGGC
CCGGTGGCGGCGGCGACGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MSDTFDSTPQTARPEDEHRFPCSNCGSDMRYAPTDGKMICDHCGNEEAIEVADGPWGGGEGLVENDFEAALRGEVAAAEM
EETRVSACPSCGAQVQFDGATHSEECPFCATPVVADTGTHRHIKPKGLIPFQLTERDASKAMNNWLSGLWFAPNGLKQYA
RKDSTLDGIYVPYWTYDADTATSYRGQRGTAYYVTVKGPDGKPRQERRMRWTRASGRVARFFDDILVLASKSLPKRYTDA
LAPWDLSALAEYKPEFLSGFRAEGYTVELDEGMDEARRIMDAQIRRDICRDIGGDAQKIDAMDTHVDDVTFKHVLLPVWI
AAYKYRGKSFRFVVNAQSGKVQGERPYSWGKIALAVIAAVVFAGAVFYGLEVMDR

Sequences:

>Translated_375_residues
MSDTFDSTPQTARPEDEHRFPCSNCGSDMRYAPTDGKMICDHCGNEEAIEVADGPWGGGEGLVENDFEAALRGEVAAAEM
EETRVSACPSCGAQVQFDGATHSEECPFCATPVVADTGTHRHIKPKGLIPFQLTERDASKAMNNWLSGLWFAPNGLKQYA
RKDSTLDGIYVPYWTYDADTATSYRGQRGTAYYVTVKGPDGKPRQERRMRWTRASGRVARFFDDILVLASKSLPKRYTDA
LAPWDLSALAEYKPEFLSGFRAEGYTVELDEGMDEARRIMDAQIRRDICRDIGGDAQKIDAMDTHVDDVTFKHVLLPVWI
AAYKYRGKSFRFVVNAQSGKVQGERPYSWGKIALAVIAAVVFAGAVFYGLEVMDR
>Mature_374_residues
SDTFDSTPQTARPEDEHRFPCSNCGSDMRYAPTDGKMICDHCGNEEAIEVADGPWGGGEGLVENDFEAALRGEVAAAEME
ETRVSACPSCGAQVQFDGATHSEECPFCATPVVADTGTHRHIKPKGLIPFQLTERDASKAMNNWLSGLWFAPNGLKQYAR
KDSTLDGIYVPYWTYDADTATSYRGQRGTAYYVTVKGPDGKPRQERRMRWTRASGRVARFFDDILVLASKSLPKRYTDAL
APWDLSALAEYKPEFLSGFRAEGYTVELDEGMDEARRIMDAQIRRDICRDIGGDAQKIDAMDTHVDDVTFKHVLLPVWIA
AYKYRGKSFRFVVNAQSGKVQGERPYSWGKIALAVIAAVVFAGAVFYGLEVMDR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004039
- InterPro:   IPR013137 [H]

Pfam domain/function: PF08271 TFIIB_Zn_Ribbon [H]

EC number: NA

Molecular weight: Translated: 41697; Mature: 41566

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS00782 TFIIB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTFDSTPQTARPEDEHRFPCSNCGSDMRYAPTDGKMICDHCGNEEAIEVADGPWGGGE
CCCCCCCCCCCCCCCCCCCCCHHCCCCCCEECCCCCCEECCCCCCCCEEEECCCCCCCCC
GLVENDFEAALRGEVAAAEMEETRVSACPSCGAQVQFDGATHSEECPFCATPVVADTGTH
CCCCCCHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCC
RHIKPKGLIPFQLTERDASKAMNNWLSGLWFAPNGLKQYARKDSTLDGIYVPYWTYDADT
CCCCCCCCCEEEECHHHHHHHHHHHHHCEEECCHHHHHHHHCCCCCCCEEEEEEECCCCC
ATSYRGQRGTAYYVTVKGPDGKPRQERRMRWTRASGRVARFFDDILVLASKSLPKRYTDA
CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
LAPWDLSALAEYKPEFLSGFRAEGYTVELDEGMDEARRIMDAQIRRDICRDIGGDAQKID
CCCCCHHHHHHCCHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AMDTHVDDVTFKHVLLPVWIAAYKYRGKSFRFVVNAQSGKVQGERPYSWGKIALAVIAAV
HHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
VFAGAVFYGLEVMDR
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDTFDSTPQTARPEDEHRFPCSNCGSDMRYAPTDGKMICDHCGNEEAIEVADGPWGGGE
CCCCCCCCCCCCCCCCCCCCHHCCCCCCEECCCCCCEECCCCCCCCEEEECCCCCCCCC
GLVENDFEAALRGEVAAAEMEETRVSACPSCGAQVQFDGATHSEECPFCATPVVADTGTH
CCCCCCHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCC
RHIKPKGLIPFQLTERDASKAMNNWLSGLWFAPNGLKQYARKDSTLDGIYVPYWTYDADT
CCCCCCCCCEEEECHHHHHHHHHHHHHCEEECCHHHHHHHHCCCCCCCEEEEEEECCCCC
ATSYRGQRGTAYYVTVKGPDGKPRQERRMRWTRASGRVARFFDDILVLASKSLPKRYTDA
CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
LAPWDLSALAEYKPEFLSGFRAEGYTVELDEGMDEARRIMDAQIRRDICRDIGGDAQKID
CCCCCHHHHHHCCHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AMDTHVDDVTFKHVLLPVWIAAYKYRGKSFRFVVNAQSGKVQGERPYSWGKIALAVIAAV
HHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
VFAGAVFYGLEVMDR
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9455482; 9384377 [H]