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The map label for this gene is yebA [H]

Identifier: 89055020

GI number: 89055020

Start: 2528434

End: 2529771

Strand: Direct

Name: yebA [H]

Synonym: Jann_2529

Alternate gene names: 89055020

Gene position: 2528434-2529771 (Clockwise)

Preceding gene: 89055019

Following gene: 89055021

Centisome position: 58.56

GC content: 62.56

Gene sequence:

>1338_bases
GTGACATCTCGGCTTTTCAGCCGCGTGAACGCGGCGCTTGAACGGCATTTGCCCGAACAGCGTCTGTTTCTGAAATCAGA
AGAGGGCACGCGGTTCATTCGCCTCCGCCCCGTCACGCAGGCCAGTATGATTATGGGCTCCGCCGTTATCGTGGGGTGGA
CCGTTATCGTGACGTCGTTCTTTTTGATCGACACAATTTCCGCCGGAAATGCCCGCGATCTGGCCGAGCGGGAACAGGCG
ATGTACCAAGACCGCCTGAATGCCCTGGCGCTGGAACGCGACGCCCACGCCGCCAACGCCAGTGCCGCCCAGGACCGCTT
CGCCCTTGCGATGGACCAGGTCTCGGCCATGCAAACACGGCTTCTGGACAGCGAAGAACACACGCGGGAGCTGGAAACCG
CCGTTGACGTGATCCAGGCCACGCTGCGCCGCACGATTGACGAGCGTGACAATGCCCGCATCGCCCAAGCCGCCCTTCAG
GCAGAGCTGAGCGCAGATACCGGCACTGTTCTGACCGCCGCCGAGCGGGAGCAGGAGCTGGAGCAAACCCTCGCCTTCCT
CAACCAAGCCCTGGAATTGACCGCGGAAGAGCGGGACACCGGCTACACCATGGTCGCAGAGGCCGAGGACGAGATTAACC
GCCTGAATTTTGAGGCCGCGCTGACCGACGAGCGCTCCAGCCGTGTCTTCCGCCAGTTGGAAGAGGCCGTGGCCGTCTCG
ATGGAACCGCTCGATGAGATGTTCCGCGCCGCAGGCATGAATACCGATGACCTGATCGACGCGGTGCGCCGCGGCTATTC
CGGCCAGGGCGGCCCGCTGACGCCGATCCTGTCGACCTCTGGCGAGCCGGCCGATGGCCTGTCGATGCGCGCCAACGAAG
TTCTGGAATCGCTCGACCGGATCAACATGTACCGCATCGCGGCCGAACGACTGCCGCTGGCCATGCCAGTCAACGGCTCT
TTCCGCACAACGTCGGGCTTTGGCCCTCGCGGTGATCCGTTCAACGGCCAGCGCCGCATGCACAACGGCGTGGATTTCGC
CAGCTCGCGCGGCACGCAGATTGTTGCCGGTGGCAGCGGCATCGTGAGTTTCACTGGCCGTCAAAGCGGCTATGGCAATA
CAGTCGAGGTCGAACACGCCAACGGGTTCATGACGCGCTACGCTCACCTCTCTCGCATTCGTGTGACCGAGGGGGAAAGG
GTCTCGCGTGGAGACCTGTTAGGTGATATGGGCTGCACGGGTCGGTGCACGGGCACCCATTTGCACTATGAGGTGCATCG
CAATGGAACGCCCGTCAATCCGATGACGTTCATAAGGGCAGGACGCAATGTTTTCTAA

Upstream 100 bases:

>100_bases
CACAAAGGGCAGTGTGGCTTATCCCCAAGCACACTGCGGCGGCCGCCTGGGACAAGCTGGCGTCGTGGACAAACACAAGG
GGAAGTGAGGCGTAAGGACA

Downstream 100 bases:

>100_bases
ATCCAAGATCAATGAACCCGGATCCAAGGCTGGCGACGCGTCGTCTGGGTCCGCGAGTGCTGGTTCGGGCTCGGCAACGG
GCGCCTCTTCTGGAGATACC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 444

Protein sequence:

>445_residues
MTSRLFSRVNAALERHLPEQRLFLKSEEGTRFIRLRPVTQASMIMGSAVIVGWTVIVTSFFLIDTISAGNARDLAEREQA
MYQDRLNALALERDAHAANASAAQDRFALAMDQVSAMQTRLLDSEEHTRELETAVDVIQATLRRTIDERDNARIAQAALQ
AELSADTGTVLTAAEREQELEQTLAFLNQALELTAEERDTGYTMVAEAEDEINRLNFEAALTDERSSRVFRQLEEAVAVS
MEPLDEMFRAAGMNTDDLIDAVRRGYSGQGGPLTPILSTSGEPADGLSMRANEVLESLDRINMYRIAAERLPLAMPVNGS
FRTTSGFGPRGDPFNGQRRMHNGVDFASSRGTQIVAGGSGIVSFTGRQSGYGNTVEVEHANGFMTRYAHLSRIRVTEGER
VSRGDLLGDMGCTGRCTGTHLHYEVHRNGTPVNPMTFIRAGRNVF

Sequences:

>Translated_445_residues
MTSRLFSRVNAALERHLPEQRLFLKSEEGTRFIRLRPVTQASMIMGSAVIVGWTVIVTSFFLIDTISAGNARDLAEREQA
MYQDRLNALALERDAHAANASAAQDRFALAMDQVSAMQTRLLDSEEHTRELETAVDVIQATLRRTIDERDNARIAQAALQ
AELSADTGTVLTAAEREQELEQTLAFLNQALELTAEERDTGYTMVAEAEDEINRLNFEAALTDERSSRVFRQLEEAVAVS
MEPLDEMFRAAGMNTDDLIDAVRRGYSGQGGPLTPILSTSGEPADGLSMRANEVLESLDRINMYRIAAERLPLAMPVNGS
FRTTSGFGPRGDPFNGQRRMHNGVDFASSRGTQIVAGGSGIVSFTGRQSGYGNTVEVEHANGFMTRYAHLSRIRVTEGER
VSRGDLLGDMGCTGRCTGTHLHYEVHRNGTPVNPMTFIRAGRNVF
>Mature_444_residues
TSRLFSRVNAALERHLPEQRLFLKSEEGTRFIRLRPVTQASMIMGSAVIVGWTVIVTSFFLIDTISAGNARDLAEREQAM
YQDRLNALALERDAHAANASAAQDRFALAMDQVSAMQTRLLDSEEHTRELETAVDVIQATLRRTIDERDNARIAQAALQA
ELSADTGTVLTAAEREQELEQTLAFLNQALELTAEERDTGYTMVAEAEDEINRLNFEAALTDERSSRVFRQLEEAVAVSM
EPLDEMFRAAGMNTDDLIDAVRRGYSGQGGPLTPILSTSGEPADGLSMRANEVLESLDRINMYRIAAERLPLAMPVNGSF
RTTSGFGPRGDPFNGQRRMHNGVDFASSRGTQIVAGGSGIVSFTGRQSGYGNTVEVEHANGFMTRYAHLSRIRVTEGERV
SRGDLLGDMGCTGRCTGTHLHYEVHRNGTPVNPMTFIRAGRNVF

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=125, Percent_Identity=43.2, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=34.3434343434343, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082174, Length=107, Percent_Identity=30.8411214953271, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 49026; Mature: 48894

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRLFSRVNAALERHLPEQRLFLKSEEGTRFIRLRPVTQASMIMGSAVIVGWTVIVTSF
CCHHHHHHHHHHHHHCCCHHHHEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
FLIDTISAGNARDLAEREQAMYQDRLNALALERDAHAANASAAQDRFALAMDQVSAMQTR
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LLDSEEHTRELETAVDVIQATLRRTIDERDNARIAQAALQAELSADTGTVLTAAEREQEL
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHH
EQTLAFLNQALELTAEERDTGYTMVAEAEDEINRLNFEAALTDERSSRVFRQLEEAVAVS
HHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCHHEECCCHHHHHHHHHHHHHHHH
MEPLDEMFRAAGMNTDDLIDAVRRGYSGQGGPLTPILSTSGEPADGLSMRANEVLESLDR
HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHH
INMYRIAAERLPLAMPVNGSFRTTSGFGPRGDPFNGQRRMHNGVDFASSRGTQIVAGGSG
HHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHCCCCCEEEECCCC
IVSFTGRQSGYGNTVEVEHANGFMTRYAHLSRIRVTEGERVSRGDLLGDMGCTGRCTGTH
EEEECCCCCCCCCEEEEECCCCHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCE
LHYEVHRNGTPVNPMTFIRAGRNVF
EEEEEECCCCCCCHHHHHHCCCCCC
>Mature Secondary Structure 
TSRLFSRVNAALERHLPEQRLFLKSEEGTRFIRLRPVTQASMIMGSAVIVGWTVIVTSF
CHHHHHHHHHHHHHCCCHHHHEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
FLIDTISAGNARDLAEREQAMYQDRLNALALERDAHAANASAAQDRFALAMDQVSAMQTR
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LLDSEEHTRELETAVDVIQATLRRTIDERDNARIAQAALQAELSADTGTVLTAAEREQEL
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHH
EQTLAFLNQALELTAEERDTGYTMVAEAEDEINRLNFEAALTDERSSRVFRQLEEAVAVS
HHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCHHEECCCHHHHHHHHHHHHHHHH
MEPLDEMFRAAGMNTDDLIDAVRRGYSGQGGPLTPILSTSGEPADGLSMRANEVLESLDR
HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHH
INMYRIAAERLPLAMPVNGSFRTTSGFGPRGDPFNGQRRMHNGVDFASSRGTQIVAGGSG
HHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHCCCCCEEEECCCC
IVSFTGRQSGYGNTVEVEHANGFMTRYAHLSRIRVTEGERVSRGDLLGDMGCTGRCTGTH
EEEECCCCCCCCCEEEEECCCCHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCE
LHYEVHRNGTPVNPMTFIRAGRNVF
EEEEEECCCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]