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The map label for this gene is cspE [C]

Identifier: 89054965

GI number: 89054965

Start: 2471968

End: 2472513

Strand: Reverse

Name: cspE [C]

Synonym: Jann_2474

Alternate gene names: 89054965

Gene position: 2472513-2471968 (Counterclockwise)

Preceding gene: 89054966

Following gene: 89054964

Centisome position: 57.26

GC content: 60.81

Gene sequence:

>546_bases
ATGGTTAAGAGTGTTGGAGAGAGTTTAGTGGGACGCGCAGATTCGGGTGCCATTTGTCCGACAGTGGCCGGCGTGGTGAA
GTGGTTTGACACCACAAAAGGGTTCGGATTTGTCCTGTCCGACGAAGGTGGTCCCGACATTCTTCTGCACGCCAATGTTC
TGCGCAGCTTCGGACGGGGATCCATCGCCGAAGGCGCGCGCGTCATGCTCCGCACGCAGGCCACCGGACGAGGTCTTCAA
GCCGTAGAGATCATCGCGATTGAGGCCGTTGTGGGCGAGCCCACAGACCCGGATCGTCCCATCCCCGATATGCCTGATGC
GACCGATGTTCCCCTTGTGGCAGCGCGCGTGAAGTGGTTTGACAAGGCCAAGGGCTTCGGCTTTGCCAATGTGTTCGGCC
ATTCCGAGGACGTGTTCGTGCATGTCGAAGTTCTGCGCCGCTCCGGCTTTACCGAGCTTCAGCCCGGTGAGGCGGTGGCC
ATGAAGGTGGTTGATGGTCCGCGGGGCCGGATGGCCGCTGAAGTGCGGACCTGGGACGCGATATAG

Upstream 100 bases:

>100_bases
TGTTGCCGATATGCAATTTCGTTCAACGTGAAATTGCAAGCACCTGATAAGCCGCGATTCTTTCATCTTGTATCCTTGTG
GATAGGTGCGACGATTAACC

Downstream 100 bases:

>100_bases
GCTTGGCCCTCACGCCATTGGGGCTCCGGCCCGATTGGAAGATGTGAGGCTTGATAGCGATGCTCCGGACATTCCTGATG
ACATTGGCGGTTGCGGTGAC

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: Transcriptional Regulator Cold Shock Protein; Cold Shock-Like Protein CspA; Cold Shock Domain-Containing Protein CspD; Cold Shock-Like Protein CspE; Cold Shock Protein CspA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MVKSVGESLVGRADSGAICPTVAGVVKWFDTTKGFGFVLSDEGGPDILLHANVLRSFGRGSIAEGARVMLRTQATGRGLQ
AVEIIAIEAVVGEPTDPDRPIPDMPDATDVPLVAARVKWFDKAKGFGFANVFGHSEDVFVHVEVLRRSGFTELQPGEAVA
MKVVDGPRGRMAAEVRTWDAI

Sequences:

>Translated_181_residues
MVKSVGESLVGRADSGAICPTVAGVVKWFDTTKGFGFVLSDEGGPDILLHANVLRSFGRGSIAEGARVMLRTQATGRGLQ
AVEIIAIEAVVGEPTDPDRPIPDMPDATDVPLVAARVKWFDKAKGFGFANVFGHSEDVFVHVEVLRRSGFTELQPGEAVA
MKVVDGPRGRMAAEVRTWDAI
>Mature_181_residues
MVKSVGESLVGRADSGAICPTVAGVVKWFDTTKGFGFVLSDEGGPDILLHANVLRSFGRGSIAEGARVMLRTQATGRGLQ
AVEIIAIEAVVGEPTDPDRPIPDMPDATDVPLVAARVKWFDKAKGFGFANVFGHSEDVFVHVEVLRRSGFTELQPGEAVA
MKVVDGPRGRMAAEVRTWDAI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19289; Mature: 19289

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKSVGESLVGRADSGAICPTVAGVVKWFDTTKGFGFVLSDEGGPDILLHANVLRSFGRG
CCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEHHHHHHCCCC
SIAEGARVMLRTQATGRGLQAVEIIAIEAVVGEPTDPDRPIPDMPDATDVPLVAARVKWF
CCCCCCEEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
DKAKGFGFANVFGHSEDVFVHVEVLRRSGFTELQPGEAVAMKVVDGPRGRMAAEVRTWDA
HHCCCCCCHHHCCCCCCEEEEEEHHHHCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCC
I
C
>Mature Secondary Structure
MVKSVGESLVGRADSGAICPTVAGVVKWFDTTKGFGFVLSDEGGPDILLHANVLRSFGRG
CCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEHHHHHHCCCC
SIAEGARVMLRTQATGRGLQAVEIIAIEAVVGEPTDPDRPIPDMPDATDVPLVAARVKWF
CCCCCCEEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
DKAKGFGFANVFGHSEDVFVHVEVLRRSGFTELQPGEAVAMKVVDGPRGRMAAEVRTWDA
HHCCCCCCHHHCCCCCCEEEEEEHHHHCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCC
I
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA