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The map label for this gene is ywnA [H]

Identifier: 89054908

GI number: 89054908

Start: 2415562

End: 2415987

Strand: Direct

Name: ywnA [H]

Synonym: Jann_2417

Alternate gene names: 89054908

Gene position: 2415562-2415987 (Clockwise)

Preceding gene: 89054907

Following gene: 89054909

Centisome position: 55.94

GC content: 56.34

Gene sequence:

>426_bases
ATGCCCGTAAGTTCTCGCCTTGCCGTTGCCACTCATATCCTAACCGTCATGGCGGTGAAGGGGGATGTGCCTATCGGATC
GGAAGACATTGCCAAGCGTGCGAGCACAAATGCGGCTGTTGTGCGCAAGATCATCAGCATGCTGGGGCGGTCGGGTATAA
CGACGTCACAGACAGGCGCGAAAGGCGGCACGCATCTCGCGCGTGCACCAGAGCAGATCACGCTTCTGGACGTTTATCGC
GCCGTAGACACGCAAGAGATTTTTGCCAGCCCAAATTGCCCGCCTGATGCATCCTGCCCTATCGGTTCGCAAATCGGTCC
GGTTCTTGATGAGGTTAAAGCCAAAGCGACGCAGGCCATGGAAGCCGAACTCGCAGCCGTCTCAATAGCCGCTATTGCGG
ACAAACTAAAACCACTTCCAGCGTAA

Upstream 100 bases:

>100_bases
TTTACTAGATGCTGCGCGCTGCAAGGATGTCAGCTTCTTCTGCTTTGGTGGAAAAATGCAATGAGTTGAAAACCGTCACC
GCACTGCATACAATTTCGTC

Downstream 100 bases:

>100_bases
GTCACGAACCGGAAAATCCGCATTGACGTCCTGAAGACTAAACTGTAACCATATCGATTACTGATATATCTGGAGAGGGA
GTAATTGGTTGAAATACGCG

Product: BadM/Rrf2 family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MPVSSRLAVATHILTVMAVKGDVPIGSEDIAKRASTNAAVVRKIISMLGRSGITTSQTGAKGGTHLARAPEQITLLDVYR
AVDTQEIFASPNCPPDASCPIGSQIGPVLDEVKAKATQAMEAELAAVSIAAIADKLKPLPA

Sequences:

>Translated_141_residues
MPVSSRLAVATHILTVMAVKGDVPIGSEDIAKRASTNAAVVRKIISMLGRSGITTSQTGAKGGTHLARAPEQITLLDVYR
AVDTQEIFASPNCPPDASCPIGSQIGPVLDEVKAKATQAMEAELAAVSIAAIADKLKPLPA
>Mature_140_residues
PVSSRLAVATHILTVMAVKGDVPIGSEDIAKRASTNAAVVRKIISMLGRSGITTSQTGAKGGTHLARAPEQITLLDVYRA
VDTQEIFASPNCPPDASCPIGSQIGPVLDEVKAKATQAMEAELAAVSIAAIADKLKPLPA

Specific function: Unknown

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 14513; Mature: 14382

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVSSRLAVATHILTVMAVKGDVPIGSEDIAKRASTNAAVVRKIISMLGRSGITTSQTGA
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC
KGGTHLARAPEQITLLDVYRAVDTQEIFASPNCPPDASCPIGSQIGPVLDEVKAKATQAM
CCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
EAELAAVSIAAIADKLKPLPA
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PVSSRLAVATHILTVMAVKGDVPIGSEDIAKRASTNAAVVRKIISMLGRSGITTSQTGA
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC
KGGTHLARAPEQITLLDVYRAVDTQEIFASPNCPPDASCPIGSQIGPVLDEVKAKATQAM
CCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
EAELAAVSIAAIADKLKPLPA
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9150240; 9384377 [H]