Click here to switch to the map view.

The map label for this gene is potC [H]

Identifier: 89054892

GI number: 89054892

Start: 2401788

End: 2402594

Strand: Reverse

Name: potC [H]

Synonym: Jann_2401

Alternate gene names: 89054892

Gene position: 2402594-2401788 (Counterclockwise)

Preceding gene: 89054893

Following gene: 89054891

Centisome position: 55.64

GC content: 61.09

Gene sequence:

>807_bases
ATGAGGTTTTCAGCCCTTGGCATCTTCGCCGTGCTCTACCTGATCTTCCTTTATGCACCGATCATCCTGCTGCCGATTTT
CGCGTTCAACGACGGCACAATTATTGCCTTTCCCCTGCAGGGGGTCACGACCGGATGGTTCACGCAATTGGCCACGATCC
CGGCGCTGCACGAGGCAACCATCAACTCCCTGATCATCGCGGTTTCGGTCGCTATTTTGGCCACGTGCCTGGGCCTTTTC
GCGGCGCGGGCGGCCACGCGGTACGAGTTTCCGGTCAAGGCCGGGATCATGGGGTTCATCATGCTGCCGCTGGTCCTGCC
GGAGGTGATCGTGGCAATCTCTCTTCTGGTCGTGCTGATGCAACTGGGCCTGACCACGTCGATCTACACGATCATCGCGG
GGCACACGCTGCTGTGCATGCCCTTTGCCATCGCGATCCTGCAAGGCAGCTTCTCGGGCCTCGACCGCTCGCTGGAAGAA
GCGGCCATGGATCTGGGGGAGACGCGGGTGGGTGCGTTCCGGCTGGTCATTCTGCCGCTGGTGACACCCGGCATCATCGC
CTCTCTGCTGATCTGTTTCATCATCTCACTGGATGAGTTCATCATCGCCTTCTTCCTGTCAGGCAATGAGCCAACGCTGC
CCGTCTACCTTTGGGGCCAGTTGCGCTTCCCGGCGCGGCTGCCAGTCGTCATGGCGCTTGGCACGCTTCTTGTGGGGCTC
TCGATCATCCTGTTGATCGTGGCCGACATCTTCCGCCGCCGTGGCCTGCGCCGCGCCGGACAATCCGACGCCGGAGGGTT
CTTATGA

Upstream 100 bases:

>100_bases
CCTATTTCGGGCCCGCAGGCACCCTTGGCCTGATGGCGGCGATCATGGCGGGGGGCGCGATTGCCATCGCGGTCTTTGTG
CCAAAGGGCAGGTGGGGGAT

Downstream 100 bases:

>100_bases
CTGAACCGCTGATCACCTTGTCAGACGTGAACAAGTACTACGGCAGCTATCACGCCCTGCGAAACATCACGACCGAGATC
GGCGCGGGGGAGTTCTTTTC

Product: binding-protein-dependent transport systems inner membrane component

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MRFSALGIFAVLYLIFLYAPIILLPIFAFNDGTIIAFPLQGVTTGWFTQLATIPALHEATINSLIIAVSVAILATCLGLF
AARAATRYEFPVKAGIMGFIMLPLVLPEVIVAISLLVVLMQLGLTTSIYTIIAGHTLLCMPFAIAILQGSFSGLDRSLEE
AAMDLGETRVGAFRLVILPLVTPGIIASLLICFIISLDEFIIAFFLSGNEPTLPVYLWGQLRFPARLPVVMALGTLLVGL
SIILLIVADIFRRRGLRRAGQSDAGGFL

Sequences:

>Translated_268_residues
MRFSALGIFAVLYLIFLYAPIILLPIFAFNDGTIIAFPLQGVTTGWFTQLATIPALHEATINSLIIAVSVAILATCLGLF
AARAATRYEFPVKAGIMGFIMLPLVLPEVIVAISLLVVLMQLGLTTSIYTIIAGHTLLCMPFAIAILQGSFSGLDRSLEE
AAMDLGETRVGAFRLVILPLVTPGIIASLLICFIISLDEFIIAFFLSGNEPTLPVYLWGQLRFPARLPVVMALGTLLVGL
SIILLIVADIFRRRGLRRAGQSDAGGFL
>Mature_268_residues
MRFSALGIFAVLYLIFLYAPIILLPIFAFNDGTIIAFPLQGVTTGWFTQLATIPALHEATINSLIIAVSVAILATCLGLF
AARAATRYEFPVKAGIMGFIMLPLVLPEVIVAISLLVVLMQLGLTTSIYTIIAGHTLLCMPFAIAILQGSFSGLDRSLEE
AAMDLGETRVGAFRLVILPLVTPGIIASLLICFIISLDEFIIAFFLSGNEPTLPVYLWGQLRFPARLPVVMALGTLLVGL
SIILLIVADIFRRRGLRRAGQSDAGGFL

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=219, Percent_Identity=31.5068493150685, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787081, Length=261, Percent_Identity=33.7164750957854, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787714, Length=250, Percent_Identity=32.4, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788764, Length=175, Percent_Identity=26.8571428571429, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28866; Mature: 28866

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSALGIFAVLYLIFLYAPIILLPIFAFNDGTIIAFPLQGVTTGWFTQLATIPALHEAT
CCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
INSLIIAVSVAILATCLGLFAARAATRYEFPVKAGIMGFIMLPLVLPEVIVAISLLVVLM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLGLTTSIYTIIAGHTLLCMPFAIAILQGSFSGLDRSLEEAAMDLGETRVGAFRLVILPL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VTPGIIASLLICFIISLDEFIIAFFLSGNEPTLPVYLWGQLRFPARLPVVMALGTLLVGL
HCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHH
SIILLIVADIFRRRGLRRAGQSDAGGFL
HHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRFSALGIFAVLYLIFLYAPIILLPIFAFNDGTIIAFPLQGVTTGWFTQLATIPALHEAT
CCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
INSLIIAVSVAILATCLGLFAARAATRYEFPVKAGIMGFIMLPLVLPEVIVAISLLVVLM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLGLTTSIYTIIAGHTLLCMPFAIAILQGSFSGLDRSLEEAAMDLGETRVGAFRLVILPL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VTPGIIASLLICFIISLDEFIIAFFLSGNEPTLPVYLWGQLRFPARLPVVMALGTLLVGL
HCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHH
SIILLIVADIFRRRGLRRAGQSDAGGFL
HHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]