| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is braF [H]
Identifier: 89054756
GI number: 89054756
Start: 2273253
End: 2274017
Strand: Reverse
Name: braF [H]
Synonym: Jann_2265
Alternate gene names: 89054756
Gene position: 2274017-2273253 (Counterclockwise)
Preceding gene: 89054757
Following gene: 89054755
Centisome position: 52.66
GC content: 59.87
Gene sequence:
>765_bases ATGACCTCCCTGAGGCTGACAAACTTGTCGAAACGCTTCGGCGGCGTGGTTGCTTCCGAGGACGTGAATATTGAGGTGCC GACAGGCAAGATCATCGGCCTGATCGGGCCAAACGGCGCGGGCAAGACCACAATCGTCAATATGATCACCGGCATGCTGC CGGTCTCGGGTGGGACGATCCATGTGGGCGATACGGACATCACCCATGCCCCCGCCCATGAGATTTGCCGCTCTGGCTTT GCGCGTACGTTCCAGAATATCCGCCTTTTGGGGGAGGCCAGCGTTCTGGACAATGTGATGATCGGCTTTCACCGGCATGA GACGTCGTCGACACTCGCCGCGCTGCTTGGTCTGCCTGCCGCCGCGCAGGAGACGGCGGCGCTCAAGGCCCGCACCATGG ATTTGCTGTCCGAGTTCGATCTGACCGAGTTCGCCGACTACCCCGCAGGCGGCCTGTCCTACGGCCACCAACGCAAGGTC GAGATGGCGCGCGCGGTTGCGACCAACCCTGATTTCGTTTTGCTGGATGAACCCATCGCAGGCATGAACGATGTCGAAAG CGATGCGCTGGCTGACATTTTCCAAGGCTTCGCGCGGGACGGCAAAGGGGTGCTTCTGATCGAGCACAACGTGCGTTTCG TCGCCAAGCTCTGCTCTTATGTCTATGTGTTGGACGGCGGAAACCTCATCTCAGAAGGGACACCGGACCATGTTCTGAAT GATCCTGCCGTGATCAGCGCCTATCTGGGGGGCGAGGATGCTTGA
Upstream 100 bases:
>100_bases TGCTGATCCTCGTGATCAACTTCATGCCCAAGGGGGTGGCCGACACAGCGATTGACGCGATCAAGTCGCGGCGATTGAAA GCCAAACGGGGGGACAGCGC
Downstream 100 bases:
>100_bases GCTTCGTGATCTGAAGGTAGCCTATTCCGGCATTCAGGCGCTCCGCGGGGTGTCGTTGGACGTGGCGAAGGGCGAAACCG TCGCGCTGATTGGGCCAAAT
Product: ABC transporter-like protein
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 254; Mature: 253
Protein sequence:
>254_residues MTSLRLTNLSKRFGGVVASEDVNIEVPTGKIIGLIGPNGAGKTTIVNMITGMLPVSGGTIHVGDTDITHAPAHEICRSGF ARTFQNIRLLGEASVLDNVMIGFHRHETSSTLAALLGLPAAAQETAALKARTMDLLSEFDLTEFADYPAGGLSYGHQRKV EMARAVATNPDFVLLDEPIAGMNDVESDALADIFQGFARDGKGVLLIEHNVRFVAKLCSYVYVLDGGNLISEGTPDHVLN DPAVISAYLGGEDA
Sequences:
>Translated_254_residues MTSLRLTNLSKRFGGVVASEDVNIEVPTGKIIGLIGPNGAGKTTIVNMITGMLPVSGGTIHVGDTDITHAPAHEICRSGF ARTFQNIRLLGEASVLDNVMIGFHRHETSSTLAALLGLPAAAQETAALKARTMDLLSEFDLTEFADYPAGGLSYGHQRKV EMARAVATNPDFVLLDEPIAGMNDVESDALADIFQGFARDGKGVLLIEHNVRFVAKLCSYVYVLDGGNLISEGTPDHVLN DPAVISAYLGGEDA >Mature_253_residues TSLRLTNLSKRFGGVVASEDVNIEVPTGKIIGLIGPNGAGKTTIVNMITGMLPVSGGTIHVGDTDITHAPAHEICRSGFA RTFQNIRLLGEASVLDNVMIGFHRHETSSTLAALLGLPAAAQETAALKARTMDLLSEFDLTEFADYPAGGLSYGHQRKVE MARAVATNPDFVLLDEPIAGMNDVESDALADIFQGFARDGKGVLLIEHNVRFVAKLCSYVYVLDGGNLISEGTPDHVLND PAVISAYLGGEDA
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0411
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI31657092, Length=244, Percent_Identity=29.0983606557377, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI150417984, Length=237, Percent_Identity=28.6919831223629, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI105990541, Length=237, Percent_Identity=29.957805907173, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI47078218, Length=231, Percent_Identity=27.7056277056277, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI45446740, Length=231, Percent_Identity=27.7056277056277, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI27881501, Length=225, Percent_Identity=28, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI30795238, Length=229, Percent_Identity=27.9475982532751, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI11967969, Length=230, Percent_Identity=27.3913043478261, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI153792144, Length=225, Percent_Identity=27.1111111111111, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI27436953, Length=225, Percent_Identity=28, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI21536376, Length=223, Percent_Identity=25.1121076233184, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI27262624, Length=223, Percent_Identity=25.1121076233184, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI27262626, Length=223, Percent_Identity=25.1121076233184, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI11967971, Length=228, Percent_Identity=25, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI116734710, Length=240, Percent_Identity=27.0833333333333, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI171184400, Length=236, Percent_Identity=24.1525423728814, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI9955968, Length=226, Percent_Identity=27.4336283185841, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI9955966, Length=226, Percent_Identity=27.4336283185841, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI45243524, Length=226, Percent_Identity=27.4336283185841, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI27477115, Length=218, Percent_Identity=25.6880733944954, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1789864, Length=248, Percent_Identity=37.0967741935484, Blast_Score=184, Evalue=4e-48, Organism=Escherichia coli, GI1789593, Length=250, Percent_Identity=37.2, Blast_Score=152, Evalue=2e-38, Organism=Escherichia coli, GI1788761, Length=243, Percent_Identity=30.0411522633745, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI87081709, Length=250, Percent_Identity=27.6, Blast_Score=107, Evalue=5e-25, Organism=Escherichia coli, GI1787029, Length=240, Percent_Identity=26.25, Blast_Score=104, Evalue=7e-24, Organism=Escherichia coli, GI87082268, Length=249, Percent_Identity=30.1204819277108, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1788225, Length=252, Percent_Identity=27.7777777777778, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI48994943, Length=233, Percent_Identity=27.0386266094421, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1790467, Length=244, Percent_Identity=26.2295081967213, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1787370, Length=251, Percent_Identity=26.2948207171315, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1788472, Length=228, Percent_Identity=28.0701754385965, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1786398, Length=246, Percent_Identity=27.2357723577236, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1789991, Length=253, Percent_Identity=27.6679841897233, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1789032, Length=228, Percent_Identity=25.8771929824561, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1790190, Length=229, Percent_Identity=24.8908296943231, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI1790525, Length=241, Percent_Identity=24.896265560166, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1788210, Length=247, Percent_Identity=25.1012145748988, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI87081791, Length=240, Percent_Identity=24.1666666666667, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1786563, Length=233, Percent_Identity=27.4678111587983, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1790544, Length=263, Percent_Identity=28.8973384030418, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1790739, Length=237, Percent_Identity=27.4261603375527, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1788450, Length=250, Percent_Identity=28, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786872, Length=239, Percent_Identity=26.3598326359833, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI48995001, Length=227, Percent_Identity=26.431718061674, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789672, Length=238, Percent_Identity=25.2100840336134, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI87081782, Length=237, Percent_Identity=27.8481012658228, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1789873, Length=230, Percent_Identity=29.5652173913043, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1787089, Length=236, Percent_Identity=25.4237288135593, Blast_Score=80, Evalue=9e-17, Organism=Escherichia coli, GI1786345, Length=244, Percent_Identity=26.6393442622951, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1788644, Length=255, Percent_Identity=27.0588235294118, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787759, Length=243, Percent_Identity=26.3374485596708, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1788897, Length=235, Percent_Identity=26.8085106382979, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI87081834, Length=231, Percent_Identity=24.6753246753247, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87082267, Length=254, Percent_Identity=24.8031496062992, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790162, Length=248, Percent_Identity=23.3870967741935, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786803, Length=247, Percent_Identity=23.4817813765182, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI48994997, Length=242, Percent_Identity=23.5537190082645, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1787164, Length=229, Percent_Identity=24.8908296943231, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787792, Length=232, Percent_Identity=24.1379310344828, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1786253, Length=229, Percent_Identity=25.764192139738, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787712, Length=189, Percent_Identity=28.042328042328, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1789891, Length=217, Percent_Identity=24.4239631336406, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786703, Length=220, Percent_Identity=26.3636363636364, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787105, Length=226, Percent_Identity=23.0088495575221, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1789962, Length=241, Percent_Identity=22.8215767634855, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786975, Length=245, Percent_Identity=22.8571428571429, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787112, Length=228, Percent_Identity=25, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787143, Length=231, Percent_Identity=25.5411255411255, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI2367384, Length=62, Percent_Identity=43.5483870967742, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI115533608, Length=237, Percent_Identity=26.5822784810127, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17510237, Length=234, Percent_Identity=26.9230769230769, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71983510, Length=239, Percent_Identity=25.9414225941423, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI71983516, Length=239, Percent_Identity=25.9414225941423, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI71983523, Length=239, Percent_Identity=25.9414225941423, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17541710, Length=225, Percent_Identity=27.5555555555556, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17565586, Length=237, Percent_Identity=22.7848101265823, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17569145, Length=225, Percent_Identity=27.1111111111111, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI115534520, Length=244, Percent_Identity=25, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI25146777, Length=224, Percent_Identity=23.6607142857143, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193211017, Length=225, Percent_Identity=23.5555555555556, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193211015, Length=225, Percent_Identity=23.5555555555556, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71996809, Length=225, Percent_Identity=23.5555555555556, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6322980, Length=227, Percent_Identity=25.9911894273128, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI221512771, Length=240, Percent_Identity=32.0833333333333, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI28573573, Length=233, Percent_Identity=27.4678111587983, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI28573571, Length=233, Percent_Identity=27.4678111587983, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI28574150, Length=229, Percent_Identity=29.2576419213974, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI116007328, Length=229, Percent_Identity=29.2576419213974, Blast_Score=84, Evalue=7e-17, Organism=Drosophila melanogaster, GI24666092, Length=245, Percent_Identity=26.530612244898, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24643674, Length=238, Percent_Identity=24.3697478991597, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI221500365, Length=234, Percent_Identity=23.9316239316239, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI116007184, Length=236, Percent_Identity=23.728813559322, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI85725262, Length=227, Percent_Identity=27.3127753303965, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24581191, Length=218, Percent_Identity=26.1467889908257, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24581189, Length=218, Percent_Identity=26.1467889908257, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24581193, Length=218, Percent_Identity=26.1467889908257, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24581195, Length=218, Percent_Identity=26.1467889908257, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI17136662, Length=212, Percent_Identity=26.4150943396226, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 26892; Mature: 26761
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSLRLTNLSKRFGGVVASEDVNIEVPTGKIIGLIGPNGAGKTTIVNMITGMLPVSGGTI CCCEECCHHHHHHCCEEECCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHEECCCCEE HVGDTDITHAPAHEICRSGFARTFQNIRLLGEASVLDNVMIGFHRHETSSTLAALLGLPA EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHCCCC AAQETAALKARTMDLLSEFDLTEFADYPAGGLSYGHQRKVEMARAVATNPDFVLLDEPIA CHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCC GMNDVESDALADIFQGFARDGKGVLLIEHNVRFVAKLCSYVYVLDGGNLISEGTPDHVLN CCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHEEEEEECCCCCCCCCCCHHCC DPAVISAYLGGEDA CCCEEEEECCCCCC >Mature Secondary Structure TSLRLTNLSKRFGGVVASEDVNIEVPTGKIIGLIGPNGAGKTTIVNMITGMLPVSGGTI CCEECCHHHHHHCCEEECCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHEECCCCEE HVGDTDITHAPAHEICRSGFARTFQNIRLLGEASVLDNVMIGFHRHETSSTLAALLGLPA EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHCCCC AAQETAALKARTMDLLSEFDLTEFADYPAGGLSYGHQRKVEMARAVATNPDFVLLDEPIA CHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCC GMNDVESDALADIFQGFARDGKGVLLIEHNVRFVAKLCSYVYVLDGGNLISEGTPDHVLN CCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHEEEEEECCCCCCCCCCCHHCC DPAVISAYLGGEDA CCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043 [H]