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The map label for this gene is yfkH [H]

Identifier: 89054703

GI number: 89054703

Start: 2219248

End: 2220171

Strand: Direct

Name: yfkH [H]

Synonym: Jann_2212

Alternate gene names: 89054703

Gene position: 2219248-2220171 (Clockwise)

Preceding gene: 89054702

Following gene: 89054704

Centisome position: 51.4

GC content: 59.09

Gene sequence:

>924_bases
ATGGCACCTGGCCATATCGCTGAGACACCCACTGACAGACCCGCCCGCCTTAGAGACGACATCGCCGAAGATCGCGTTTG
CCTGATCGTGGCGGGCGTTGCCTTTTACGGCCTTCTCGCCCTGTTCCCCAACATCACGGCGTTGATTGCAGTCAACGGAC
TGCCGGTAGAGCCAAGCGCCATCGTCGACCAGTTACGCAGCCTGTTCGGTGTCGTGCCGCAGGAGCTCATTGCGATCATT
ACCGATCAAGCCACCGCCATAGCAGGGTCCCGCGAGGATGGGTTTGGGCTTGCAGTCGTCACCGGAGTTCTCGTCGCGCT
TTATTCAGCCTCCAAGGGCATGTCGAGCCTGATGGAAGGAATTAACATCGCCTATGATGAACACGAAAAGCGCGGGTTTA
TCCGCCTCAAGCTGGCGACCTTCGCCCAGACGATCTTCTTGATTCTGGGGCTCGTGATCACGCTTCTGGCGATGCTTGGC
CGTCCTGCGGCGCTGGGGATTGCAGACCTTGGAGGAGTGGTCGAGCCCCTCATTTCTATCGGCCTGTTTTTGGCTCTCCC
GGTCCTCACGATGTTGGGTCTGTCGGTCCTTTACCCCTATGCGCCCTCGCGGGATGAACCCGAATGGAAATGGGCATCTT
TGGGGAGAATTGAGCGCTGCCTCTTGCGGCTCGCGGCCTCTGCTGGCTTCCCGTTCTACGTCAGTAACTTCGGATCTTAT
AACGACGGTATCGGGGCGCTTGCCGGTGATATCGTCGTGCTCACGTGGTTCTGGATCTCGGCATTCATAATCTTGAAGGG
GGCTGAACTGAACGCAGAGCTTGAAGCGCACACACGGGTCGACGCGACAGCCGGTCGTGATCAGCCAGTGGGACAGCGCG
ACGCGAAGAAGGCCGGCCGTTGGGGTGAGGCCGCTGACAAATGA

Upstream 100 bases:

>100_bases
CGACGGCGGAAGACGAAAATCTTGGTCGCCCGAAGTCTTAATGACAAACGAAGGGGGCCACCGCGCTGGCCCTCCTCGCC
TATTTTGAAGAGAGCAAAAG

Downstream 100 bases:

>100_bases
AGAATTGGCGTCTCAAATGCTGAGTTCAACGTTCTGGATCCTGGGGTGTGGTGTATTGGCCGCGACACTCCTGCCGCTGA
CCAACAGCGTGCGGTGGTGG

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MAPGHIAETPTDRPARLRDDIAEDRVCLIVAGVAFYGLLALFPNITALIAVNGLPVEPSAIVDQLRSLFGVVPQELIAII
TDQATAIAGSREDGFGLAVVTGVLVALYSASKGMSSLMEGINIAYDEHEKRGFIRLKLATFAQTIFLILGLVITLLAMLG
RPAALGIADLGGVVEPLISIGLFLALPVLTMLGLSVLYPYAPSRDEPEWKWASLGRIERCLLRLAASAGFPFYVSNFGSY
NDGIGALAGDIVVLTWFWISAFIILKGAELNAELEAHTRVDATAGRDQPVGQRDAKKAGRWGEAADK

Sequences:

>Translated_307_residues
MAPGHIAETPTDRPARLRDDIAEDRVCLIVAGVAFYGLLALFPNITALIAVNGLPVEPSAIVDQLRSLFGVVPQELIAII
TDQATAIAGSREDGFGLAVVTGVLVALYSASKGMSSLMEGINIAYDEHEKRGFIRLKLATFAQTIFLILGLVITLLAMLG
RPAALGIADLGGVVEPLISIGLFLALPVLTMLGLSVLYPYAPSRDEPEWKWASLGRIERCLLRLAASAGFPFYVSNFGSY
NDGIGALAGDIVVLTWFWISAFIILKGAELNAELEAHTRVDATAGRDQPVGQRDAKKAGRWGEAADK
>Mature_306_residues
APGHIAETPTDRPARLRDDIAEDRVCLIVAGVAFYGLLALFPNITALIAVNGLPVEPSAIVDQLRSLFGVVPQELIAIIT
DQATAIAGSREDGFGLAVVTGVLVALYSASKGMSSLMEGINIAYDEHEKRGFIRLKLATFAQTIFLILGLVITLLAMLGR
PAALGIADLGGVVEPLISIGLFLALPVLTMLGLSVLYPYAPSRDEPEWKWASLGRIERCLLRLAASAGFPFYVSNFGSYN
DGIGALAGDIVVLTWFWISAFIILKGAELNAELEAHTRVDATAGRDQPVGQRDAKKAGRWGEAADK

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 32743; Mature: 32612

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPGHIAETPTDRPARLRDDIAEDRVCLIVAGVAFYGLLALFPNITALIAVNGLPVEPSA
CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCCHHH
IVDQLRSLFGVVPQELIAIITDQATAIAGSREDGFGLAVVTGVLVALYSASKGMSSLMEG
HHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
INIAYDEHEKRGFIRLKLATFAQTIFLILGLVITLLAMLGRPAALGIADLGGVVEPLISI
HCCHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHH
GLFLALPVLTMLGLSVLYPYAPSRDEPEWKWASLGRIERCLLRLAASAGFPFYVSNFGSY
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCC
NDGIGALAGDIVVLTWFWISAFIILKGAELNAELEAHTRVDATAGRDQPVGQRDAKKAGR
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHCCC
WGEAADK
CCCCCCC
>Mature Secondary Structure 
APGHIAETPTDRPARLRDDIAEDRVCLIVAGVAFYGLLALFPNITALIAVNGLPVEPSA
CCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCCHHH
IVDQLRSLFGVVPQELIAIITDQATAIAGSREDGFGLAVVTGVLVALYSASKGMSSLMEG
HHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
INIAYDEHEKRGFIRLKLATFAQTIFLILGLVITLLAMLGRPAALGIADLGGVVEPLISI
HCCHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHH
GLFLALPVLTMLGLSVLYPYAPSRDEPEWKWASLGRIERCLLRLAASAGFPFYVSNFGSY
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCC
NDGIGALAGDIVVLTWFWISAFIILKGAELNAELEAHTRVDATAGRDQPVGQRDAKKAGR
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHCCC
WGEAADK
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]