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The map label for this gene is soxD [H]

Identifier: 89054676

GI number: 89054676

Start: 2191473

End: 2191796

Strand: Direct

Name: soxD [H]

Synonym: Jann_2185

Alternate gene names: 89054676

Gene position: 2191473-2191796 (Clockwise)

Preceding gene: 89054675

Following gene: 89054677

Centisome position: 50.75

GC content: 63.89

Gene sequence:

>324_bases
ATGCTGACACTCACCTGTCCCAATTGCGGCATTGCGGCCTGCGAGACGGAACTTGTGCCCGGTGGCGAGGCGCATCTGAC
GCGCCATGGCCCCGGCTCCTCCGATGATCAGTTCGAGGCCTATCTGTTCATGCGCCCCAACGCCAAGGGTGTGCATTTTG
AACGCTGGCGGCACGCGGCGGGCTGTGGCAAGTGGTTCCTGGCGGCGCGCGACACGGCCACGCTTGAGGTCTTCGGGACC
TATTCGGCCCAGACGACCGAGCCCCCCGCCGAGATCATCGCCAAAATCCAAAGCAAACGCCCCGGTTGGAGCTTTTCCGC
ATGA

Upstream 100 bases:

>100_bases
ACTTGAAAAACCTGGCCTGGACGGGGTGCGCCCTGTCCGGGCCAATTGCCATGCGCGCCTCCGCGCTTCACTTCCCCCAA
TTCCAAGGAGGCGTCGCACC

Downstream 100 bases:

>100_bases
GCACCCGTCTGAAACCTCAAGCCGCGTCCAAATGGGGGCGTCTGATCGACCGTGACACATCGGTGAAATTCACCTTCAAC
GGCAAGTGGATGCGCGGCCA

Product: sarcosine oxidase subunit delta, heterotetrameric

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MLTLTCPNCGIAACETELVPGGEAHLTRHGPGSSDDQFEAYLFMRPNAKGVHFERWRHAAGCGKWFLAARDTATLEVFGT
YSAQTTEPPAEIIAKIQSKRPGWSFSA

Sequences:

>Translated_107_residues
MLTLTCPNCGIAACETELVPGGEAHLTRHGPGSSDDQFEAYLFMRPNAKGVHFERWRHAAGCGKWFLAARDTATLEVFGT
YSAQTTEPPAEIIAKIQSKRPGWSFSA
>Mature_107_residues
MLTLTCPNCGIAACETELVPGGEAHLTRHGPGSSDDQFEAYLFMRPNAKGVHFERWRHAAGCGKWFLAARDTATLEVFGT
YSAQTTEPPAEIIAKIQSKRPGWSFSA

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 11670; Mature: 11670

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLTCPNCGIAACETELVPGGEAHLTRHGPGSSDDQFEAYLFMRPNAKGVHFERWRHAA
CEEEECCCCCEEEEEEECCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHCCC
GCGKWFLAARDTATLEVFGTYSAQTTEPPAEIIAKIQSKRPGWSFSA
CCCEEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLTLTCPNCGIAACETELVPGGEAHLTRHGPGSSDDQFEAYLFMRPNAKGVHFERWRHAA
CEEEECCCCCEEEEEEECCCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHCCC
GCGKWFLAARDTATLEVFGTYSAQTTEPPAEIIAKIQSKRPGWSFSA
CCCEEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7543100 [H]