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The map label for this gene is soxB [H]

Identifier: 89054674

GI number: 89054674

Start: 2189432

End: 2190676

Strand: Direct

Name: soxB [H]

Synonym: Jann_2183

Alternate gene names: 89054674

Gene position: 2189432-2190676 (Clockwise)

Preceding gene: 89054669

Following gene: 89054675

Centisome position: 50.71

GC content: 63.78

Gene sequence:

>1245_bases
ATGCGTAAATATTCTGCCTTTGCCATCGCCCGCGAAGCCTTCCGCCACCATGACGGGTGGGAACGGGCGTGGCGGTCCCC
GACGCCCAAGGCCAGCTATGACGTGATCATTGTGGGCGCAGGCGGGCACGGGTTGGCCACGGCCTATTATCTGGGCAAGA
ACCACGGCATCACCAATGTCGCGGTGATCGAGAAGGGGTGGCTTGGCGGCGGCAACACCGGGCGCAACACGACGATTATC
CGGTCGAACTACCTGCAGGACCCGTCTGCCGCGATCTACGAAAAAGCGCGGTCTTTGTATGAAACCCTGTCCCAGGACCT
GAACTACAACATCATGTTCAGCCCGCGCGGTGTCATCATGCTGGCCCAGACCCACCATGAGGTGCGAGGCTATCTGCGCA
CGGCCCAGGCCAACGCGCTGCAAGGGGTCGCGACGCGGTTTATCGACAAGCATGAGGTCAAGCGGCTCGTGCCGATCATG
AATATCGAGGGCCCGCGCTATCCGGTTCTGGGCGGGCTGTGGCAGGCGCGCGGCGGCACGGCGCGCCATGACGCGGTGGC
CTGGGGCTATGCGCGGGCGTGTTCCGACATGGGCATGGACATCATCCAGCAGACCGAAGTCACTGGCGTGCGGGTCGAGG
GTGGCGCGGTGAAGGGCGTCGAGACGTCCAAGGGGTTCATCGGATGCAAGAAACTGGGCGGCGTGGTCGCCGGGCATTCA
AGCGTATTGGCCGAGATGGCCGGCTTCCGTCTGCCGATGGAAAGCGTTGCGTTGCAGGCGCTGGTGTCCGAGCCGATCAA
GCCCTGCATGGACGTGGTCGTCATGGCCAATACGGTCCACGGCTACCTCAGCCAGTCCGACAAGGGTGAGATGGTCATTG
GCGGCGGCACTGACGGCTACAACAATTACACCCAGCGCGGGTCCTTCCATCACGTGGAGGAAACCGTGCGCGCGTTGATC
GAGACCTTCCCGATGCTGTCGCGCCTGAAAATGCTGCGCCAATGGGGCGGGATCGTGGATGTGACGGGCGACCGCTCTCC
GATCCTGTCGAAAACGCCTGTGGACGGCATGTTCATGAATTGCGGCTGGGGCACGGGCGGGTTCAAGGCGATCCCGGGCT
CTGGCTGGGGCTTTGCGGAGCTGATGGCGACGGGGCATTCGCCGCTGACGGCGGAGTTCGGGATGGAGCGGTTCCGCGAA
GGGCGGTTCATTGACGAATCTGTCGCCGCCGGGGTGGCCCATTGA

Upstream 100 bases:

>100_bases
CATGGCCAAGGGTCGCAAATTGCACGTCTTGTGTCGCGGGCAGTATCCTCTTTTTCAGCCGCAGCCCCAAAAGCAAAGAG
ACAGGACCGGAGCCCGCCCC

Downstream 100 bases:

>100_bases
CGGACATCCGCCCCCCCATGCGTGGAAAACGCGCCCTCCTGGCTGACGCTGCCGCTTCAATCGCCGCCCGGTCCGCCGCC
GATGTTGGATTTGTTTTTGC

Product: sarcosine oxidase beta subunit family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MRKYSAFAIAREAFRHHDGWERAWRSPTPKASYDVIIVGAGGHGLATAYYLGKNHGITNVAVIEKGWLGGGNTGRNTTII
RSNYLQDPSAAIYEKARSLYETLSQDLNYNIMFSPRGVIMLAQTHHEVRGYLRTAQANALQGVATRFIDKHEVKRLVPIM
NIEGPRYPVLGGLWQARGGTARHDAVAWGYARACSDMGMDIIQQTEVTGVRVEGGAVKGVETSKGFIGCKKLGGVVAGHS
SVLAEMAGFRLPMESVALQALVSEPIKPCMDVVVMANTVHGYLSQSDKGEMVIGGGTDGYNNYTQRGSFHHVEETVRALI
ETFPMLSRLKMLRQWGGIVDVTGDRSPILSKTPVDGMFMNCGWGTGGFKAIPGSGWGFAELMATGHSPLTAEFGMERFRE
GRFIDESVAAGVAH

Sequences:

>Translated_414_residues
MRKYSAFAIAREAFRHHDGWERAWRSPTPKASYDVIIVGAGGHGLATAYYLGKNHGITNVAVIEKGWLGGGNTGRNTTII
RSNYLQDPSAAIYEKARSLYETLSQDLNYNIMFSPRGVIMLAQTHHEVRGYLRTAQANALQGVATRFIDKHEVKRLVPIM
NIEGPRYPVLGGLWQARGGTARHDAVAWGYARACSDMGMDIIQQTEVTGVRVEGGAVKGVETSKGFIGCKKLGGVVAGHS
SVLAEMAGFRLPMESVALQALVSEPIKPCMDVVVMANTVHGYLSQSDKGEMVIGGGTDGYNNYTQRGSFHHVEETVRALI
ETFPMLSRLKMLRQWGGIVDVTGDRSPILSKTPVDGMFMNCGWGTGGFKAIPGSGWGFAELMATGHSPLTAEFGMERFRE
GRFIDESVAAGVAH
>Mature_414_residues
MRKYSAFAIAREAFRHHDGWERAWRSPTPKASYDVIIVGAGGHGLATAYYLGKNHGITNVAVIEKGWLGGGNTGRNTTII
RSNYLQDPSAAIYEKARSLYETLSQDLNYNIMFSPRGVIMLAQTHHEVRGYLRTAQANALQGVATRFIDKHEVKRLVPIM
NIEGPRYPVLGGLWQARGGTARHDAVAWGYARACSDMGMDIIQQTEVTGVRVEGGAVKGVETSKGFIGCKKLGGVVAGHS
SVLAEMAGFRLPMESVALQALVSEPIKPCMDVVVMANTVHGYLSQSDKGEMVIGGGTDGYNNYTQRGSFHHVEETVRALI
ETFPMLSRLKMLRQWGGIVDVTGDRSPILSKTPVDGMFMNCGWGTGGFKAIPGSGWGFAELMATGHSPLTAEFGMERFRE
GRFIDESVAAGVAH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=378, Percent_Identity=22.4867724867725, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI21361378, Length=378, Percent_Identity=22.4867724867725, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI194306651, Length=391, Percent_Identity=23.5294117647059, Blast_Score=75, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 44956; Mature: 44956

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKYSAFAIAREAFRHHDGWERAWRSPTPKASYDVIIVGAGGHGLATAYYLGKNHGITNV
CCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEE
AVIEKGWLGGGNTGRNTTIIRSNYLQDPSAAIYEKARSLYETLSQDLNYNIMFSPRGVIM
EEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEE
LAQTHHEVRGYLRTAQANALQGVATRFIDKHEVKRLVPIMNIEGPRYPVLGGLWQARGGT
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHCCHHHCCCCC
ARHDAVAWGYARACSDMGMDIIQQTEVTGVRVEGGAVKGVETSKGFIGCKKLGGVVAGHS
CCHHHHHHHHHHHHHHCCHHHHHHCCCCEEEECCCEEECCCCCCCCEEHHHHCCCCCCHH
SVLAEMAGFRLPMESVALQALVSEPIKPCMDVVVMANTVHGYLSQSDKGEMVIGGGTDGY
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
NNYTQRGSFHHVEETVRALIETFPMLSRLKMLRQWGGIVDVTGDRSPILSKTPVDGMFMN
CCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEE
CGWGTGGFKAIPGSGWGFAELMATGHSPLTAEFGMERFREGRFIDESVAAGVAH
CCCCCCCCEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCC
>Mature Secondary Structure
MRKYSAFAIAREAFRHHDGWERAWRSPTPKASYDVIIVGAGGHGLATAYYLGKNHGITNV
CCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEE
AVIEKGWLGGGNTGRNTTIIRSNYLQDPSAAIYEKARSLYETLSQDLNYNIMFSPRGVIM
EEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEE
LAQTHHEVRGYLRTAQANALQGVATRFIDKHEVKRLVPIMNIEGPRYPVLGGLWQARGGT
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHCCHHHCCCCC
ARHDAVAWGYARACSDMGMDIIQQTEVTGVRVEGGAVKGVETSKGFIGCKKLGGVVAGHS
CCHHHHHHHHHHHHHHCCHHHHHHCCCCEEEECCCEEECCCCCCCCEEHHHHCCCCCCHH
SVLAEMAGFRLPMESVALQALVSEPIKPCMDVVVMANTVHGYLSQSDKGEMVIGGGTDGY
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
NNYTQRGSFHHVEETVRALIETFPMLSRLKMLRQWGGIVDVTGDRSPILSKTPVDGMFMN
CCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEE
CGWGTGGFKAIPGSGWGFAELMATGHSPLTAEFGMERFREGRFIDESVAAGVAH
CCCCCCCCEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7543100; 1939012; 3202887; 7692961 [H]