| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89054397
Identifier: 89054397
GI number: 89054397
Start: 1895383
End: 1895880
Strand: Direct
Name: 89054397
Synonym: Jann_1906
Alternate gene names: NA
Gene position: 1895383-1895880 (Clockwise)
Preceding gene: 89054392
Following gene: 89054403
Centisome position: 43.9
GC content: 66.06
Gene sequence:
>498_bases ATGTCAGACGTTGCACAGGTGGAGGAGGTGGCGGATCGCGCCGTCCGCATCACGCGATCTTTCCCGGCACCCCGCGCCAC GATCTGGCGGGCCTTCACCGACAAGGCTGTTCTGGTCCATTGGCTCGCCGGCCCGCCCGGGTGGGAGATGGAGGCGTGTG ACATCACACTCCAGCCCGGCGGCGGCTATCGGTGGCTTTGGCGTCATCCGGATACGGGGGAGCGGTTCGGGTTCAAGGGA ACCTACCGTGTGGTCGAGCCGGGGCGGCGCGTGATCGACAAACAGCGTTTCGATCAGGATGGGCAGGCTCTTCCGGCCCA TGCACGCACGCTCAACACCGTGGTCTTCGAGGATGAGGGGCAGGGGTGCCGGGTCACGACAATCATCCGCTACCCGGATC AGGCCACCCGCGACATGGTCGTGAGCGAAGGCTTGGGTGAGGGGATGGAACTGTCCTACCAACGCCTCGAACGGCTGCTG CTGCGGGTGGCCGCCTGA
Upstream 100 bases:
>100_bases GGTGGTCCCGCAAGGGGGTATGTGAATCTTTTTCACATAAACCGATGATTCATGGTTTTGCGACTAGATTAGGTCAGCAC GTATGGAGGAGAAGGCCCAA
Downstream 100 bases:
>100_bases CCCGGCGGGCTAGCTCCGGCTGCGTCCCTCAAACCGGGGTAGCATGGCCGAAAAGTCCCGGCCCTTACCGTCTTCCTCCT CCACAAATCGCCGGTAGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 165; Mature: 164
Protein sequence:
>165_residues MSDVAQVEEVADRAVRITRSFPAPRATIWRAFTDKAVLVHWLAGPPGWEMEACDITLQPGGGYRWLWRHPDTGERFGFKG TYRVVEPGRRVIDKQRFDQDGQALPAHARTLNTVVFEDEGQGCRVTTIIRYPDQATRDMVVSEGLGEGMELSYQRLERLL LRVAA
Sequences:
>Translated_165_residues MSDVAQVEEVADRAVRITRSFPAPRATIWRAFTDKAVLVHWLAGPPGWEMEACDITLQPGGGYRWLWRHPDTGERFGFKG TYRVVEPGRRVIDKQRFDQDGQALPAHARTLNTVVFEDEGQGCRVTTIIRYPDQATRDMVVSEGLGEGMELSYQRLERLL LRVAA >Mature_164_residues SDVAQVEEVADRAVRITRSFPAPRATIWRAFTDKAVLVHWLAGPPGWEMEACDITLQPGGGYRWLWRHPDTGERFGFKGT YRVVEPGRRVIDKQRFDQDGQALPAHARTLNTVVFEDEGQGCRVTTIIRYPDQATRDMVVSEGLGEGMELSYQRLERLLL RVAA
Specific function: Unknown
COG id: COG3832
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18714; Mature: 18583
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDVAQVEEVADRAVRITRSFPAPRATIWRAFTDKAVLVHWLAGPPGWEMEACDITLQPG CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEEECCC GGYRWLWRHPDTGERFGFKGTYRVVEPGRRVIDKQRFDQDGQALPAHARTLNTVVFEDEG CCEEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCHHEEEEEEECCCC QGCRVTTIIRYPDQATRDMVVSEGLGEGMELSYQRLERLLLRVAA CCEEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure SDVAQVEEVADRAVRITRSFPAPRATIWRAFTDKAVLVHWLAGPPGWEMEACDITLQPG CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEEECCC GGYRWLWRHPDTGERFGFKGTYRVVEPGRRVIDKQRFDQDGQALPAHARTLNTVVFEDEG CCEEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCHHEEEEEEECCCC QGCRVTTIIRYPDQATRDMVVSEGLGEGMELSYQRLERLLLRVAA CCEEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA