| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is yoaV [H]
Identifier: 89054292
GI number: 89054292
Start: 1790177
End: 1791070
Strand: Direct
Name: yoaV [H]
Synonym: Jann_1801
Alternate gene names: 89054292
Gene position: 1790177-1791070 (Clockwise)
Preceding gene: 89054284
Following gene: 89054296
Centisome position: 41.46
GC content: 62.98
Gene sequence:
>894_bases ATGGCCCAGAAATCCCGGATCGACGCCTTTGGCGCGATCTCGCTTACCGGCTTCGCGCTTCTTCTGGCGTTCAATCAGGT GCTCATCAAGTTCGTGAACGAGGGCTTGCAGCCGATGTTTTTCGCAGGCCTCCGGTCGCTCGGCGGGGCCATTGTGATCT TTGCCTGGATGAAGGTGCGCGGGCTGTCCATTTCAATCGCGCCCGGCACGTTGCCCGCCGGTCTGATGATCGGCACCGTC TTTGCGCTGGAGTTCGTGTGCCTGTTTTGGGCACTGGATCTGACAAGTGTGACACGCACCTCCGTCATCTTCTACACCAT GCCGATGTGGCTGGCCCTGGCCGCCCATTTTCTGATGCCCGGGGAGCGGCTGACACCTGTGAAGTTGACCGGACTTGCGG TGGCGTTCGCGGGTGTTGTCGTGGCCCTGACAATGCGCGGGGACGGGGGAGGGGAGGCCTCTCTGCTCGGGGACATATTG GCGCTTTTGGGGGCTATATTCTGGGCCGCCATTGCGCTTTGCGCGCGGGCCACAAAGTTGCGCGAGGTCCGGCCTGAGAT GCAGTTGCTTTGGCAACTCGCCGTCTCCGCGCCCCTGTTGCTGTTGGCATCGCTGGCCTTTGGCCCGCTGCTGCGCGCGC CGGAGATGATCCATTGGATCGGCCTTGGTGCGCAGATCCTGCTAATCGTGTCGGCGGGCTTCCTGTTCTGGCTGTGGCTG CTAACGATCTACCCGGCCAGTTCCGTGGCTGCATTCTCCTTCCTGACGCCCGTCTTCGGTGTGGCGCTTGGCTGGCTGGT TCTGGGGGAAGAAGTGGGGCCAGGCATCCTCGTGGCGCTGACGCTGGTGTGTTTGGGGCTGCTGCTGATCAACCGGCCCG CCCGGAGCGGATGA
Upstream 100 bases:
>100_bases ATCGGTATTCCGGTGCCGGGACGGCGACAGAGCGCGCCCTTTCTTGACACGGGTCAGCCATCTCGGCAGGGACGAGGTGC ACGCGAGAGGAGCAGCGCTG
Downstream 100 bases:
>100_bases CCCCTGCCCAGATCCGGTGCGTCGGAGGCCCTCGCGCCGTTTAGGTGCCGCAGAAGGTTTGGGTGACGGCTTCCGAGCGT GCCGGTGTGGCTTGCAGATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MAQKSRIDAFGAISLTGFALLLAFNQVLIKFVNEGLQPMFFAGLRSLGGAIVIFAWMKVRGLSISIAPGTLPAGLMIGTV FALEFVCLFWALDLTSVTRTSVIFYTMPMWLALAAHFLMPGERLTPVKLTGLAVAFAGVVVALTMRGDGGGEASLLGDIL ALLGAIFWAAIALCARATKLREVRPEMQLLWQLAVSAPLLLLASLAFGPLLRAPEMIHWIGLGAQILLIVSAGFLFWLWL LTIYPASSVAAFSFLTPVFGVALGWLVLGEEVGPGILVALTLVCLGLLLINRPARSG
Sequences:
>Translated_297_residues MAQKSRIDAFGAISLTGFALLLAFNQVLIKFVNEGLQPMFFAGLRSLGGAIVIFAWMKVRGLSISIAPGTLPAGLMIGTV FALEFVCLFWALDLTSVTRTSVIFYTMPMWLALAAHFLMPGERLTPVKLTGLAVAFAGVVVALTMRGDGGGEASLLGDIL ALLGAIFWAAIALCARATKLREVRPEMQLLWQLAVSAPLLLLASLAFGPLLRAPEMIHWIGLGAQILLIVSAGFLFWLWL LTIYPASSVAAFSFLTPVFGVALGWLVLGEEVGPGILVALTLVCLGLLLINRPARSG >Mature_296_residues AQKSRIDAFGAISLTGFALLLAFNQVLIKFVNEGLQPMFFAGLRSLGGAIVIFAWMKVRGLSISIAPGTLPAGLMIGTVF ALEFVCLFWALDLTSVTRTSVIFYTMPMWLALAAHFLMPGERLTPVKLTGLAVAFAGVVVALTMRGDGGGEASLLGDILA LLGAIFWAAIALCARATKLREVRPEMQLLWQLAVSAPLLLLASLAFGPLLRAPEMIHWIGLGAQILLIVSAGFLFWLWLL TIYPASSVAAFSFLTPVFGVALGWLVLGEEVGPGILVALTLVCLGLLLINRPARSG
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31625; Mature: 31493
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQKSRIDAFGAISLTGFALLLAFNQVLIKFVNEGLQPMFFAGLRSLGGAIVIFAWMKVR CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHH GLSISIAPGTLPAGLMIGTVFALEFVCLFWALDLTSVTRTSVIFYTMPMWLALAAHFLMP CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GERLTPVKLTGLAVAFAGVVVALTMRGDGGGEASLLGDILALLGAIFWAAIALCARATKL CCCCCCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH REVRPEMQLLWQLAVSAPLLLLASLAFGPLLRAPEMIHWIGLGAQILLIVSAGFLFWLWL HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LTIYPASSVAAFSFLTPVFGVALGWLVLGEEVGPGILVALTLVCLGLLLINRPARSG HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AQKSRIDAFGAISLTGFALLLAFNQVLIKFVNEGLQPMFFAGLRSLGGAIVIFAWMKVR CCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHH GLSISIAPGTLPAGLMIGTVFALEFVCLFWALDLTSVTRTSVIFYTMPMWLALAAHFLMP CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GERLTPVKLTGLAVAFAGVVVALTMRGDGGGEASLLGDILALLGAIFWAAIALCARATKL CCCCCCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH REVRPEMQLLWQLAVSAPLLLLASLAFGPLLRAPEMIHWIGLGAQILLIVSAGFLFWLWL HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LTIYPASSVAAFSFLTPVFGVALGWLVLGEEVGPGILVALTLVCLGLLLINRPARSG HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]