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The map label for this gene is ureD

Identifier: 89054235

GI number: 89054235

Start: 1736706

End: 1737458

Strand: Direct

Name: ureD

Synonym: Jann_1744

Alternate gene names: 89054235

Gene position: 1736706-1737458 (Clockwise)

Preceding gene: 89054234

Following gene: 89054236

Centisome position: 40.22

GC content: 69.19

Gene sequence:

>753_bases
ATGGCCCGGTTCACGGGCAGGCGCTTGCGCGATCTGCATCAAAGCGGGTCGGCCAAGGTGCTGATCCCGCGCGTGTTTGG
CCGTGCGCCCGAGGTGGTGTTTCTGAATACCGCAGGCGGCATCACGGGGGGCGACCGGCTGGACTACGCCTTGCACGTGG
ACGATGGCACCTGCGTTGGCACCACCCAGACGGCGGAGCGTGCGTATCGCAGCCACGGCCCCATGGGGCGGGTCAGCACG
CGCCTGACGATTGGCCAGGGGGCGACATTGCATTGGGTGCCGCAGGAAATGATCCTGTTTGACGGCGTGGCGCTGGAGCG
GGACCTGTCCGTGGAGATGGCCGGGGATGCTGAGCTGGTGATGCTGGAAACGCTCGTTCTGGGGCGCGCGGCGATGGGCG
AGGTGCTGCGCGATCTTCACCTGCGGGACCGCCGCCGGGTGACGCGGGGTGGCAAACTGGCAATGGTGGAAGCGATTGGT
CTCGGGCCGGACGATTTTGCCAGCAGCAGCCCGGCGGGCCTGAACGGAGCCGTGGCGACCGCGTCGCTGACGCTGATGGC
ACAGGATGCGGAGGACCGGTTGAACGCCCTGCGGGCCGTCCTGCCGACAGATGTGCGGTCGGCGGCAAGCGCGTGGGACG
GGCGGCTGACAGCGCGGTTTCTGGCACCGCAGGCCTACCCGCTGCGGCGTGCCGTGGCGCGTGCGGTCGAGCAGGTCACA
TGCGGGGCTCTGCCGCGCGTCTGGCAGATCTAG

Upstream 100 bases:

>100_bases
GAGGGCGGACGAGCCTTGCCTGCCTCAATCCCCCGCGCCTAGGCTTGGGTCAATGTTAGACGCGGCCACTCCGACACATC
AGCGGGTCCGGGGCCGGGCG

Downstream 100 bases:

>100_bases
GGGCCAGTAGGGCACAAAAGGATGACGAATGAACTTAACACCGCGTGAGAAAGACAAACTGCTGATCAGCCTCGCCGCCA
TGGTGGCGCGCGGGCGGCTG

Product: urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MARFTGRRLRDLHQSGSAKVLIPRVFGRAPEVVFLNTAGGITGGDRLDYALHVDDGTCVGTTQTAERAYRSHGPMGRVST
RLTIGQGATLHWVPQEMILFDGVALERDLSVEMAGDAELVMLETLVLGRAAMGEVLRDLHLRDRRRVTRGGKLAMVEAIG
LGPDDFASSSPAGLNGAVATASLTLMAQDAEDRLNALRAVLPTDVRSAASAWDGRLTARFLAPQAYPLRRAVARAVEQVT
CGALPRVWQI

Sequences:

>Translated_250_residues
MARFTGRRLRDLHQSGSAKVLIPRVFGRAPEVVFLNTAGGITGGDRLDYALHVDDGTCVGTTQTAERAYRSHGPMGRVST
RLTIGQGATLHWVPQEMILFDGVALERDLSVEMAGDAELVMLETLVLGRAAMGEVLRDLHLRDRRRVTRGGKLAMVEAIG
LGPDDFASSSPAGLNGAVATASLTLMAQDAEDRLNALRAVLPTDVRSAASAWDGRLTARFLAPQAYPLRRAVARAVEQVT
CGALPRVWQI
>Mature_249_residues
ARFTGRRLRDLHQSGSAKVLIPRVFGRAPEVVFLNTAGGITGGDRLDYALHVDDGTCVGTTQTAERAYRSHGPMGRVSTR
LTIGQGATLHWVPQEMILFDGVALERDLSVEMAGDAELVMLETLVLGRAAMGEVLRDLHLRDRRRVTRGGKLAMVEAIGL
GPDDFASSSPAGLNGAVATASLTLMAQDAEDRLNALRAVLPTDVRSAASAWDGRLTARFLAPQAYPLRRAVARAVEQVTC
GALPRVWQI

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_JANSC (Q28RK1)

Other databases:

- EMBL:   CP000264
- RefSeq:   YP_509686.1
- STRING:   Q28RK1
- GeneID:   3934192
- GenomeReviews:   CP000264_GR
- KEGG:   jan:Jann_1744
- eggNOG:   COG0829
- HOGENOM:   HBG711156
- ProtClustDB:   CLSK940836
- BioCyc:   JSP290400:JANN_1744-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 26895; Mature: 26764

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARFTGRRLRDLHQSGSAKVLIPRVFGRAPEVVFLNTAGGITGGDRLDYALHVDDGTCVG
CCCCCHHHHHHHHHCCCCEEEEEHHHCCCCCEEEEECCCCCCCCCCEEEEEECCCCCEEC
TTQTAERAYRSHGPMGRVSTRLTIGQGATLHWVPQEMILFDGVALERDLSVEMAGDAELV
CCHHHHHHHHHCCCCCCCEEEEEECCCCEEEECCHHHHHHCCEEECCCCEEEECCCCHHH
MLETLVLGRAAMGEVLRDLHLRDRRRVTRGGKLAMVEAIGLGPDDFASSSPAGLNGAVAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCCCCCCCCHHHH
ASLTLMAQDAEDRLNALRAVLPTDVRSAASAWDGRLTARFLAPQAYPLRRAVARAVEQVT
EEEEEEECCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH
CGALPRVWQI
HCCCCHHHCC
>Mature Secondary Structure 
ARFTGRRLRDLHQSGSAKVLIPRVFGRAPEVVFLNTAGGITGGDRLDYALHVDDGTCVG
CCCCHHHHHHHHHCCCCEEEEEHHHCCCCCEEEEECCCCCCCCCCEEEEEECCCCCEEC
TTQTAERAYRSHGPMGRVSTRLTIGQGATLHWVPQEMILFDGVALERDLSVEMAGDAELV
CCHHHHHHHHHCCCCCCCEEEEEECCCCEEEECCHHHHHHCCEEECCCCEEEECCCCHHH
MLETLVLGRAAMGEVLRDLHLRDRRRVTRGGKLAMVEAIGLGPDDFASSSPAGLNGAVAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCCCCCCCCHHHH
ASLTLMAQDAEDRLNALRAVLPTDVRSAASAWDGRLTARFLAPQAYPLRRAVARAVEQVT
EEEEEEECCHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH
CGALPRVWQI
HCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA