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The map label for this gene is acdA [H]

Identifier: 89053994

GI number: 89053994

Start: 1473434

End: 1474615

Strand: Reverse

Name: acdA [H]

Synonym: Jann_1503

Alternate gene names: 89053994

Gene position: 1474615-1473434 (Counterclockwise)

Preceding gene: 89053995

Following gene: 89053993

Centisome position: 34.15

GC content: 63.28

Gene sequence:

>1182_bases
ATGGACCTGTCATATTCACCGAAAGAGCTGGCTTTTCAGGCCGAGGTTCGCGCCTTTCTGGCCGCGTCCCTGCCTGCGGA
TATTGCCGCGCGCGTGGCCTCCGGCGCCGGCGCGACGAAGGCGGATATGGAGGCGTGGCACGCGATCCTGAACGACAAGG
GTTGGCTTGGCGGGACCTGGCCTGCGGCGCATGGGGGATGCGATTGGGGGCCGATTGAGCTGCACATTTTTGAAGAGGAA
AGCGCGCTGGCCAATGCCCCGCGGATCGTACCTTTTGGTCTTAAAATGCTGGGGCCGGTGCTGATGAAATTCGGCACGGC
AGAGCAGCAGGCTGACTACTTGCCTCGCATTCTGGACGGGCGCGATTGGTGGTGCCAGGGCTATTCCGAGCCCGGCGCAG
GCAGCGATCTGGCCTCCCTGAAGACCCGCGCAGACCGCGACGGCGACGACTATATCATCAACGGGCAAAAGACCTGGACG
ACCTACGGCCAATACGCCAACCGCATCTTTTGTCTGGTGCGCACCAAATTTGATGGGAAGCCGCAGGCCGGGATCAGCTT
CGTGCTGATCGACCTGGAGACGCCGGGGATCGAGATGCGCCCGATCCGCCTGATCGAGGGCGGGTTTGAGGTAAACGAGG
TGTTCTTCACCGACGTCCGCGTGCCTGTCGCCAATCGGGTGGGGGAGGAAAACGCGGGCTGGACCATCGCGAAATATCTG
CTGGGGCATGAGCGCACGAACATTGCCGGAACCGGCTTTTCGGTTCAGGCGCTGGAAAAGGTGAAGGGGCTGGCACGGGG
AGTGATGCGCGGTGGTAAGCCCTTGATCCAGAACGCGTTGTTCGCGGCCCGCCTGGCGGAAGTGGAGGCTGAGTTGGAGG
CCGTGAAGATCACCAACCTGCGGATGCTGTCGAAGGCGGCGGCGGGCGGGCAGCTCGGCGCGGAGCCGTCCATGCTGAAG
ATCAAGGGCACCGTGATCCGGCAGGCGCTGAATGATCTGTCGCGCCGCGCCCTTGGCCCCGCGGCGGCCCCCTTCCCGTC
CGAAGACCTCGACAATCTGGCGATCACGCCACCGGGCCACGCCCACAACGCGGCGGGGTATTTCAACAACCGCAAAATCT
CCATCTACGGCGGCTCGAACGAGATCCAGCGCAACATTCTGGCCAAGGGATTGATGCAGTGA

Upstream 100 bases:

>100_bases
TCCTGCGGCTGTGGCACGTCCTTCTCCATGTAACGTCGCGTTCGTTCTGGCCTAATCCGGAACACCTGCTACCTTTCCCC
CACATTGAGGGAGGGTGCCG

Downstream 100 bases:

>100_bases
ACTTTGAGCAGACCGACGACCGCCGCATGTTGGCCGAGACGCTGCGCCGCTACCTTACGGACGCTTACGGCATGGAGCAT
CGCACCGCCACAGCCTACGA

Product: acyl-CoA dehydrogenase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MDLSYSPKELAFQAEVRAFLAASLPADIAARVASGAGATKADMEAWHAILNDKGWLGGTWPAAHGGCDWGPIELHIFEEE
SALANAPRIVPFGLKMLGPVLMKFGTAEQQADYLPRILDGRDWWCQGYSEPGAGSDLASLKTRADRDGDDYIINGQKTWT
TYGQYANRIFCLVRTKFDGKPQAGISFVLIDLETPGIEMRPIRLIEGGFEVNEVFFTDVRVPVANRVGEENAGWTIAKYL
LGHERTNIAGTGFSVQALEKVKGLARGVMRGGKPLIQNALFAARLAEVEAELEAVKITNLRMLSKAAAGGQLGAEPSMLK
IKGTVIRQALNDLSRRALGPAAAPFPSEDLDNLAITPPGHAHNAAGYFNNRKISIYGGSNEIQRNILAKGLMQ

Sequences:

>Translated_393_residues
MDLSYSPKELAFQAEVRAFLAASLPADIAARVASGAGATKADMEAWHAILNDKGWLGGTWPAAHGGCDWGPIELHIFEEE
SALANAPRIVPFGLKMLGPVLMKFGTAEQQADYLPRILDGRDWWCQGYSEPGAGSDLASLKTRADRDGDDYIINGQKTWT
TYGQYANRIFCLVRTKFDGKPQAGISFVLIDLETPGIEMRPIRLIEGGFEVNEVFFTDVRVPVANRVGEENAGWTIAKYL
LGHERTNIAGTGFSVQALEKVKGLARGVMRGGKPLIQNALFAARLAEVEAELEAVKITNLRMLSKAAAGGQLGAEPSMLK
IKGTVIRQALNDLSRRALGPAAAPFPSEDLDNLAITPPGHAHNAAGYFNNRKISIYGGSNEIQRNILAKGLMQ
>Mature_393_residues
MDLSYSPKELAFQAEVRAFLAASLPADIAARVASGAGATKADMEAWHAILNDKGWLGGTWPAAHGGCDWGPIELHIFEEE
SALANAPRIVPFGLKMLGPVLMKFGTAEQQADYLPRILDGRDWWCQGYSEPGAGSDLASLKTRADRDGDDYIINGQKTWT
TYGQYANRIFCLVRTKFDGKPQAGISFVLIDLETPGIEMRPIRLIEGGFEVNEVFFTDVRVPVANRVGEENAGWTIAKYL
LGHERTNIAGTGFSVQALEKVKGLARGVMRGGKPLIQNALFAARLAEVEAELEAVKITNLRMLSKAAAGGQLGAEPSMLK
IKGTVIRQALNDLSRRALGPAAAPFPSEDLDNLAITPPGHAHNAAGYFNNRKISIYGGSNEIQRNILAKGLMQ

Specific function: Involved in the degradation of long-chain fatty acids [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI187960098, Length=399, Percent_Identity=26.0651629072682, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI4557231, Length=399, Percent_Identity=26.0651629072682, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI226958412, Length=245, Percent_Identity=29.7959183673469, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI226958414, Length=212, Percent_Identity=31.1320754716981, Blast_Score=95, Evalue=9e-20,
Organism=Homo sapiens, GI4557233, Length=301, Percent_Identity=27.5747508305648, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI4501859, Length=407, Percent_Identity=26.5356265356265, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI4501857, Length=410, Percent_Identity=23.6585365853659, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI7656849, Length=315, Percent_Identity=26.6666666666667, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI211971008, Length=306, Percent_Identity=27.7777777777778, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI48976061, Length=306, Percent_Identity=27.7777777777778, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI38505218, Length=236, Percent_Identity=27.9661016949153, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI21361497, Length=148, Percent_Identity=33.1081081081081, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI4557235, Length=157, Percent_Identity=31.2101910828025, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI76496475, Length=157, Percent_Identity=31.2101910828025, Blast_Score=69, Evalue=8e-12,
Organism=Escherichia coli, GI87081958, Length=312, Percent_Identity=27.2435897435897, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1786223, Length=269, Percent_Identity=27.8810408921933, Blast_Score=75, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17570075, Length=406, Percent_Identity=26.6009852216749, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17534899, Length=350, Percent_Identity=26, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17538396, Length=269, Percent_Identity=28.6245353159851, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17569725, Length=211, Percent_Identity=29.3838862559242, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17508101, Length=357, Percent_Identity=26.6106442577031, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71985184, Length=209, Percent_Identity=29.1866028708134, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71985192, Length=209, Percent_Identity=29.1866028708134, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17505929, Length=292, Percent_Identity=29.1095890410959, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17506239, Length=357, Percent_Identity=25.4901960784314, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17551932, Length=170, Percent_Identity=32.3529411764706, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI32563615, Length=244, Percent_Identity=28.2786885245902, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71990804, Length=319, Percent_Identity=26.0188087774295, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17533517, Length=265, Percent_Identity=27.5471698113208, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17562446, Length=246, Percent_Identity=25.609756097561, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21355753, Length=262, Percent_Identity=29.3893129770992, Blast_Score=95, Evalue=9e-20,
Organism=Drosophila melanogaster, GI24660351, Length=252, Percent_Identity=29.3650793650794, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24666513, Length=347, Percent_Identity=26.8011527377522, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21356377, Length=348, Percent_Identity=25.8620689655172, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24646207, Length=352, Percent_Identity=25.2840909090909, Blast_Score=75, Evalue=8e-14,
Organism=Drosophila melanogaster, GI281363737, Length=198, Percent_Identity=25.7575757575758, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 42504; Mature: 42504

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLSYSPKELAFQAEVRAFLAASLPADIAARVASGAGATKADMEAWHAILNDKGWLGGTW
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCC
PAAHGGCDWGPIELHIFEEESALANAPRIVPFGLKMLGPVLMKFGTAEQQADYLPRILDG
CCCCCCCCCCCEEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
RDWWCQGYSEPGAGSDLASLKTRADRDGDDYIINGQKTWTTYGQYANRIFCLVRTKFDGK
CCCEECCCCCCCCCCHHHHHHHHCCCCCCCEEECCCEEEHHHHHHHCEEEEEEEECCCCC
PQAGISFVLIDLETPGIEMRPIRLIEGGFEVNEVFFTDVRVPVANRVGEENAGWTIAKYL
CCCCEEEEEEEECCCCCCCCEEEEEECCCEECEEEEEEECCCHHHHCCCCCCCHHHHHHH
LGHERTNIAGTGFSVQALEKVKGLARGVMRGGKPLIQNALFAARLAEVEAELEAVKITNL
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEHHH
RMLSKAAAGGQLGAEPSMLKIKGTVIRQALNDLSRRALGPAAAPFPSEDLDNLAITPPGH
HHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCC
AHNAAGYFNNRKISIYGGSNEIQRNILAKGLMQ
CCCCCCEECCCEEEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLSYSPKELAFQAEVRAFLAASLPADIAARVASGAGATKADMEAWHAILNDKGWLGGTW
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCC
PAAHGGCDWGPIELHIFEEESALANAPRIVPFGLKMLGPVLMKFGTAEQQADYLPRILDG
CCCCCCCCCCCEEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
RDWWCQGYSEPGAGSDLASLKTRADRDGDDYIINGQKTWTTYGQYANRIFCLVRTKFDGK
CCCEECCCCCCCCCCHHHHHHHHCCCCCCCEEECCCEEEHHHHHHHCEEEEEEEECCCCC
PQAGISFVLIDLETPGIEMRPIRLIEGGFEVNEVFFTDVRVPVANRVGEENAGWTIAKYL
CCCCEEEEEEEECCCCCCCCEEEEEECCCEECEEEEEEECCCHHHHCCCCCCCHHHHHHH
LGHERTNIAGTGFSVQALEKVKGLARGVMRGGKPLIQNALFAARLAEVEAELEAVKITNL
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEHHH
RMLSKAAAGGQLGAEPSMLKIKGTVIRQALNDLSRRALGPAAAPFPSEDLDNLAITPPGH
HHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCC
AHNAAGYFNNRKISIYGGSNEIQRNILAKGLMQ
CCCCCCEECCCEEEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]