| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is arnT [H]
Identifier: 89053973
GI number: 89053973
Start: 1452752
End: 1454395
Strand: Reverse
Name: arnT [H]
Synonym: Jann_1482
Alternate gene names: 89053973
Gene position: 1454395-1452752 (Counterclockwise)
Preceding gene: 89053974
Following gene: 89053972
Centisome position: 33.68
GC content: 64.36
Gene sequence:
>1644_bases ATGACGCTGTTATCGGCCCGTAGCGCACCGTTTCTGGTGCTGCTCCTCGCGCTGGTCAGTTTTGGTGTCGGACTTGCTGA ATTGCCCGTCCAGGACCGGGATGAAGCGCGCTTTGCCCAAGCAGCGCGCCAGATGGCCGCAACGGGCGACCTGATAGACA TCCGCCTGCAAGACGCCCCGCGCCACAACAAACCGGCCTTGATTTACTGGGCGCAGACGGCTGCAATCTGGATCACGGGC GCATCGGGAGAGACACCGATCTGGGTCCACCGCCTGCCCTCCTACCTCGCTGGCGCGCTCTCGGCACTCGCGATGATCTG GGCTGGCACGCCGCTGGTCGGTCGGCGCGCAGCGGTCATCGCGGGGGTGATCTGCGCGACCATCTACATGCTTCATGCAG AGGCGCGCACGGCGAAAACGGACGCGGCCCTGTTGCTGGCGGTCATCCTGGCTATGGGCGCCATGGGCCGGGCGTGGCTG GATATCGCGCGACCTTGGTTAACGCCGTTCATCTTCTGGACGGCGCTGGCGGCAGGGTTCCTTTTGAAGGGACCCATGGT CGCCCTGCCCATGATCGGTGCAATCATTTGGATCGCGGTTCAGTTCCGCCGCGTACACTGGCTCTTGCGGCTGCGGCCTT TGCCGGGTGCAATCCTGTTTGCCGCTCTCACCGCGCCTTGGTTTATTGCGATCACCTTGGTCACGGACGGCGCGTTCTGG AGCGCCTCTCTCGGCGGCGATCTGTCCGACAAGATCACCGCGGACGGAGAGCACGCCGCCTCTCCACCGGGCTTCTACCT GCTCACGATCTGGTTCACCTTCTTCCCGTGGAGCCTGTTGATTCCATTGGCGATCTCCTACGCCTGGATGTTCCGAAGCG ACCCGAAAACGGCGTTCTTGTTGGGCGTCCTTATCCCCGGATGGATCGTGTTTGAGGCCGTGCCGGTGAAGCTCATCCAC TATACCCTACCGCTCTATCCCGCGCTCATGTTGCTGTGCGGCGCGGCGATGGTCCGCGTCTTTGACGGCACGTTGCGTCT CTCGCGATGGGCCCGCGCAATCGGCAGCATCGGCTGGCTCATCGCGCTGGCGTTTTTCACGGCAGTCGCTGTGGTCTTGC CAGTCGCCTACGGACCGGCGGAGGGGGTTCACATCCCCTCCACCCTCGGCGCGCTGGTCTTTTGTGGCGCGGGCCTCGTG GGCCTCATCCTGTTTTGGCGCAACGTGCTACCCGGGGCCATCGCTGCGCTGGCGCTCTGCGGAGTTGTCATGGGCTGGAC GCTGACAGCCGCAAGCCTGCCCGCCGCGCGGGATTTCTGGATCGCGGATCAGATCACAGAGGCGATGTCCGCCAATGCCT GCCTGACGGGACCGGTAGCTCTTGCCGGATACGCAGAACCCTCGTCGGTGTTTCGCCTCGGCACCGATACGATCCTGACG GACGCGGATGGTGCGCTCGCCTACCTGGCGGACGGTGCCAATCGCGCTGCGTGGATTGATCCCGCGCTGATCTCAAACGC GCCGAACAACGCGGAGGCCGCCCCAACGATTAACGGAATGTCGATTGGGAACTTCCGGCCCGTTCAACTTCGCCTCTACG TGTCCCCCGGTGTCCCGGCCGCGGCCGATCCCTGCGCAGGTTAA
Upstream 100 bases:
>100_bases TCATCCTTGGCCAGTCCACGGGCGTCATCGTCTACGCGCGCAACCTGATGTTGATCCACCGGTCCAAACCGACCGGGCCG GACGCGGTCCACGACCAGAA
Downstream 100 bases:
>100_bases CCTCGTTAACCACAACCTGATCCAACAGCACGTCGTAGGCAGACACGGAAATTGTCGCGAACGTAATGGACAGATCTGTC CAGAGCGCCCTAGCCTTGCG
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 547; Mature: 546
Protein sequence:
>547_residues MTLLSARSAPFLVLLLALVSFGVGLAELPVQDRDEARFAQAARQMAATGDLIDIRLQDAPRHNKPALIYWAQTAAIWITG ASGETPIWVHRLPSYLAGALSALAMIWAGTPLVGRRAAVIAGVICATIYMLHAEARTAKTDAALLLAVILAMGAMGRAWL DIARPWLTPFIFWTALAAGFLLKGPMVALPMIGAIIWIAVQFRRVHWLLRLRPLPGAILFAALTAPWFIAITLVTDGAFW SASLGGDLSDKITADGEHAASPPGFYLLTIWFTFFPWSLLIPLAISYAWMFRSDPKTAFLLGVLIPGWIVFEAVPVKLIH YTLPLYPALMLLCGAAMVRVFDGTLRLSRWARAIGSIGWLIALAFFTAVAVVLPVAYGPAEGVHIPSTLGALVFCGAGLV GLILFWRNVLPGAIAALALCGVVMGWTLTAASLPAARDFWIADQITEAMSANACLTGPVALAGYAEPSSVFRLGTDTILT DADGALAYLADGANRAAWIDPALISNAPNNAEAAPTINGMSIGNFRPVQLRLYVSPGVPAAADPCAG
Sequences:
>Translated_547_residues MTLLSARSAPFLVLLLALVSFGVGLAELPVQDRDEARFAQAARQMAATGDLIDIRLQDAPRHNKPALIYWAQTAAIWITG ASGETPIWVHRLPSYLAGALSALAMIWAGTPLVGRRAAVIAGVICATIYMLHAEARTAKTDAALLLAVILAMGAMGRAWL DIARPWLTPFIFWTALAAGFLLKGPMVALPMIGAIIWIAVQFRRVHWLLRLRPLPGAILFAALTAPWFIAITLVTDGAFW SASLGGDLSDKITADGEHAASPPGFYLLTIWFTFFPWSLLIPLAISYAWMFRSDPKTAFLLGVLIPGWIVFEAVPVKLIH YTLPLYPALMLLCGAAMVRVFDGTLRLSRWARAIGSIGWLIALAFFTAVAVVLPVAYGPAEGVHIPSTLGALVFCGAGLV GLILFWRNVLPGAIAALALCGVVMGWTLTAASLPAARDFWIADQITEAMSANACLTGPVALAGYAEPSSVFRLGTDTILT DADGALAYLADGANRAAWIDPALISNAPNNAEAAPTINGMSIGNFRPVQLRLYVSPGVPAAADPCAG >Mature_546_residues TLLSARSAPFLVLLLALVSFGVGLAELPVQDRDEARFAQAARQMAATGDLIDIRLQDAPRHNKPALIYWAQTAAIWITGA SGETPIWVHRLPSYLAGALSALAMIWAGTPLVGRRAAVIAGVICATIYMLHAEARTAKTDAALLLAVILAMGAMGRAWLD IARPWLTPFIFWTALAAGFLLKGPMVALPMIGAIIWIAVQFRRVHWLLRLRPLPGAILFAALTAPWFIAITLVTDGAFWS ASLGGDLSDKITADGEHAASPPGFYLLTIWFTFFPWSLLIPLAISYAWMFRSDPKTAFLLGVLIPGWIVFEAVPVKLIHY TLPLYPALMLLCGAAMVRVFDGTLRLSRWARAIGSIGWLIALAFFTAVAVVLPVAYGPAEGVHIPSTLGALVFCGAGLVG LILFWRNVLPGAIAALALCGVVMGWTLTAASLPAARDFWIADQITEAMSANACLTGPVALAGYAEPSSVFRLGTDTILTD ADGALAYLADGANRAAWIDPALISNAPNNAEAAPTINGMSIGNFRPVQLRLYVSPGVPAAADPCAG
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=363, Percent_Identity=25.3443526170799, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 58125; Mature: 57994
Theoretical pI: Translated: 8.13; Mature: 8.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLLSARSAPFLVLLLALVSFGVGLAELPVQDRDEARFAQAARQMAATGDLIDIRLQDAP CCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC RHNKPALIYWAQTAAIWITGASGETPIWVHRLPSYLAGALSALAMIWAGTPLVGRRAAVI CCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH AGVICATIYMLHAEARTAKTDAALLLAVILAMGAMGRAWLDIARPWLTPFIFWTALAAGF HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH LLKGPMVALPMIGAIIWIAVQFRRVHWLLRLRPLPGAILFAALTAPWFIAITLVTDGAFW HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEECCCEE SASLGGDLSDKITADGEHAASPPGFYLLTIWFTFFPWSLLIPLAISYAWMFRSDPKTAFL ECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH LGVLIPGWIVFEAVPVKLIHYTLPLYPALMLLCGAAMVRVFDGTLRLSRWARAIGSIGWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IALAFFTAVAVVLPVAYGPAEGVHIPSTLGALVFCGAGLVGLILFWRNVLPGAIAALALC HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVVMGWTLTAASLPAARDFWIADQITEAMSANACLTGPVALAGYAEPSSVFRLGTDTILT HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHEEECCCEEEE DADGALAYLADGANRAAWIDPALISNAPNNAEAAPTINGMSIGNFRPVQLRLYVSPGVPA CCCCCEEEEECCCCCCEECCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC AADPCAG CCCCCCC >Mature Secondary Structure TLLSARSAPFLVLLLALVSFGVGLAELPVQDRDEARFAQAARQMAATGDLIDIRLQDAP CCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC RHNKPALIYWAQTAAIWITGASGETPIWVHRLPSYLAGALSALAMIWAGTPLVGRRAAVI CCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH AGVICATIYMLHAEARTAKTDAALLLAVILAMGAMGRAWLDIARPWLTPFIFWTALAAGF HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH LLKGPMVALPMIGAIIWIAVQFRRVHWLLRLRPLPGAILFAALTAPWFIAITLVTDGAFW HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEECCCEE SASLGGDLSDKITADGEHAASPPGFYLLTIWFTFFPWSLLIPLAISYAWMFRSDPKTAFL ECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH LGVLIPGWIVFEAVPVKLIHYTLPLYPALMLLCGAAMVRVFDGTLRLSRWARAIGSIGWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IALAFFTAVAVVLPVAYGPAEGVHIPSTLGALVFCGAGLVGLILFWRNVLPGAIAALALC HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVVMGWTLTAASLPAARDFWIADQITEAMSANACLTGPVALAGYAEPSSVFRLGTDTILT HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHEEECCCEEEE DADGALAYLADGANRAAWIDPALISNAPNNAEAAPTINGMSIGNFRPVQLRLYVSPGVPA CCCCCEEEEECCCCCCEECCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC AADPCAG CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA