| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89053787
Identifier: 89053787
GI number: 89053787
Start: 1255838
End: 1256251
Strand: Reverse
Name: 89053787
Synonym: Jann_1296
Alternate gene names: NA
Gene position: 1256251-1255838 (Counterclockwise)
Preceding gene: 89053788
Following gene: 89053786
Centisome position: 29.09
GC content: 56.76
Gene sequence:
>414_bases ATGAAACGCACAACTTACATCTTTCACGAGGCAGTGTTGGCCGCCGGGTTTATGGCATCAGGCGCAATCGCGGCCGAAAC CATGGATACCGAGCAACTCAGCGCAATAATTGCGGGCAATACGCTATACGTCGACATTCCTGCGGGGGCACCCGGTGCAC CTGATGGTGGCACTGCGCCCATCTATTATAGCATGGACGGTTCGACCACGGCACAACTTCCAGCGGGGTTGACACTCATC GGGACATGGCGGCTTGAAGATGGTGCGTATTGCATCGATTGGGACAACGGCCCTCAAAATAGCTGCACACAGCTTATCCG CGGGGCGGATGGTTTTATCGTCATGGATCCGACCCTTGGTGAGCCGCGCGGCATGGTCACCCGGATCGTCACCGGCAACG CTGAGGATTTGTAA
Upstream 100 bases:
>100_bases CTTGTACGAATGGCGGTTCAGGGCGCAAAATTGGCGAACAAGTGGAAGATCGCCACATGGCCGGCAGGCATATTTAATTC ACCAATGAGAGGATCAAATC
Downstream 100 bases:
>100_bases GGAGTTTTGGGATGAAACTGATTACCGTAGAGGCAGATTTTGCCACCGCCGATCTTGATGCCGCTGTTGCGTTGTTCTCC AAACAGGCAAACGCCGTTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 137; Mature: 137
Protein sequence:
>137_residues MKRTTYIFHEAVLAAGFMASGAIAAETMDTEQLSAIIAGNTLYVDIPAGAPGAPDGGTAPIYYSMDGSTTAQLPAGLTLI GTWRLEDGAYCIDWDNGPQNSCTQLIRGADGFIVMDPTLGEPRGMVTRIVTGNAEDL
Sequences:
>Translated_137_residues MKRTTYIFHEAVLAAGFMASGAIAAETMDTEQLSAIIAGNTLYVDIPAGAPGAPDGGTAPIYYSMDGSTTAQLPAGLTLI GTWRLEDGAYCIDWDNGPQNSCTQLIRGADGFIVMDPTLGEPRGMVTRIVTGNAEDL >Mature_137_residues MKRTTYIFHEAVLAAGFMASGAIAAETMDTEQLSAIIAGNTLYVDIPAGAPGAPDGGTAPIYYSMDGSTTAQLPAGLTLI GTWRLEDGAYCIDWDNGPQNSCTQLIRGADGFIVMDPTLGEPRGMVTRIVTGNAEDL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14331; Mature: 14331
Theoretical pI: Translated: 3.90; Mature: 3.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRTTYIFHEAVLAAGFMASGAIAAETMDTEQLSAIIAGNTLYVDIPAGAPGAPDGGTAP CCCEEHHHHHHHHHHHHHCCCCEEEECCCHHHEEEEEECCEEEEECCCCCCCCCCCCCCC IYYSMDGSTTAQLPAGLTLIGTWRLEDGAYCIDWDNGPQNSCTQLIRGADGFIVMDPTLG EEEEECCCCEEECCCCEEEEEEEEECCCCEEEECCCCCCHHHHHHHHCCCCEEEECCCCC EPRGMVTRIVTGNAEDL CCCCEEEEEEECCCCCC >Mature Secondary Structure MKRTTYIFHEAVLAAGFMASGAIAAETMDTEQLSAIIAGNTLYVDIPAGAPGAPDGGTAP CCCEEHHHHHHHHHHHHHCCCCEEEECCCHHHEEEEEECCEEEEECCCCCCCCCCCCCCC IYYSMDGSTTAQLPAGLTLIGTWRLEDGAYCIDWDNGPQNSCTQLIRGADGFIVMDPTLG EEEEECCCCEEECCCCEEEEEEEEECCCCEEEECCCCCCHHHHHHHHCCCCEEEECCCCC EPRGMVTRIVTGNAEDL CCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA