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The map label for this gene is yocS [H]

Identifier: 89053748

GI number: 89053748

Start: 1213920

End: 1214801

Strand: Direct

Name: yocS [H]

Synonym: Jann_1257

Alternate gene names: 89053748

Gene position: 1213920-1214801 (Clockwise)

Preceding gene: 89053747

Following gene: 89053751

Centisome position: 28.11

GC content: 58.05

Gene sequence:

>882_bases
ATGGTCGGACAATTCGAACAGGCAATCCTCGCGCTCATGATCTTTGTGATCATGCTTGGCATGGGGGCATCGCTGACGCC
GCGTGATTTCATCCTCGCGCTCAAGCGCCCCTATGGGCTGATGATCGGGGTCGTGTCGCAATACGGGTTCATGCCGTTCA
TCGGGTTCATCCTTGCGCTGACCTTGCCGGTGTCCGATCCGATCAAGATCGGCATCCTGATCATGTCTTGCATGCCGGGC
GGGACCACGTCCAATATCTTCACCTACTTTTCCAAAGGGAACCTGGCGCTTTCTGTTCTCATGACGGTCACGTCGACGAT
CTTTGGCGTGATCCTGATCCCCATCGTGCTGGTCGTTTATGCGGGCGCTTTGGACGTGGATATCCCGCGCGAAAATATCA
TCGCGACCCTTGTGCTGCTGCTGGTGCCCGTGGCCATCGGCATGGTGCTGCGCAAGCTGAACGCGAATATCGGCGCGGTG
ACGGAATTCATGGGATCCATGTTGGCGATTTTCTTCATCCTGTTTCTGGTCGTCTCGTGGATCCCGCGCAACTTCGCGTT
TCTGATGGAGACGGGATGGGCGACCTATGCGGCCTCCATCGCGCTGGGGCTGATTGGCATCACGGTGGGATATCTCTTTG
CCAAGGCCCTGAAGCTGCATCCCCGCAATGCCCGCACCGTGGGTCTTGAGACGGGGATACAGAACGGCCCCCTGGCCATC
GCGATCATCGCCTTCACCTTTTCGGGGGCGGAGCAGCAGGCGGTCAATGCGGTGCCTGTCCTCTACTCCCTGTTCATCGT
GATCGTCTCGACATTGGTGACACTCTACTTCCGGCGCGCCAATACGTCTGCCGAGCAAAAGATGCCCGACAGTCTGTTGT
AG

Upstream 100 bases:

>100_bases
AAATCGAATGTCGGTAAGATCCTGCGCAAGGATCTGCGGTCGGAACAGGCCCCACTGCGCGATGCGTCCTAGAATCTCGG
TTTACAGGTAAGAATTCAAA

Downstream 100 bases:

>100_bases
GGGCCTGGATCTGCCGCCCCATGGTCAAAACGCGGGGCGGCGCGCTGTGTTTTATGCGCGCGATGGCATGTTGGTGCGGG
CCAATCACCCAGCCGCGTCC

Product: bile acid:sodium symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MVGQFEQAILALMIFVIMLGMGASLTPRDFILALKRPYGLMIGVVSQYGFMPFIGFILALTLPVSDPIKIGILIMSCMPG
GTTSNIFTYFSKGNLALSVLMTVTSTIFGVILIPIVLVVYAGALDVDIPRENIIATLVLLLVPVAIGMVLRKLNANIGAV
TEFMGSMLAIFFILFLVVSWIPRNFAFLMETGWATYAASIALGLIGITVGYLFAKALKLHPRNARTVGLETGIQNGPLAI
AIIAFTFSGAEQQAVNAVPVLYSLFIVIVSTLVTLYFRRANTSAEQKMPDSLL

Sequences:

>Translated_293_residues
MVGQFEQAILALMIFVIMLGMGASLTPRDFILALKRPYGLMIGVVSQYGFMPFIGFILALTLPVSDPIKIGILIMSCMPG
GTTSNIFTYFSKGNLALSVLMTVTSTIFGVILIPIVLVVYAGALDVDIPRENIIATLVLLLVPVAIGMVLRKLNANIGAV
TEFMGSMLAIFFILFLVVSWIPRNFAFLMETGWATYAASIALGLIGITVGYLFAKALKLHPRNARTVGLETGIQNGPLAI
AIIAFTFSGAEQQAVNAVPVLYSLFIVIVSTLVTLYFRRANTSAEQKMPDSLL
>Mature_293_residues
MVGQFEQAILALMIFVIMLGMGASLTPRDFILALKRPYGLMIGVVSQYGFMPFIGFILALTLPVSDPIKIGILIMSCMPG
GTTSNIFTYFSKGNLALSVLMTVTSTIFGVILIPIVLVVYAGALDVDIPRENIIATLVLLLVPVAIGMVLRKLNANIGAV
TEFMGSMLAIFFILFLVVSWIPRNFAFLMETGWATYAASIALGLIGITVGYLFAKALKLHPRNARTVGLETGIQNGPLAI
AIIAFTFSGAEQQAVNAVPVLYSLFIVIVSTLVTLYFRRANTSAEQKMPDSLL

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=298, Percent_Identity=30.8724832214765, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI37537552, Length=291, Percent_Identity=28.5223367697594, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI4506971, Length=264, Percent_Identity=31.4393939393939, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI24308414, Length=261, Percent_Identity=29.5019157088123, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI58219066, Length=247, Percent_Identity=27.9352226720648, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI215422368, Length=241, Percent_Identity=23.6514522821577, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI215422370, Length=241, Percent_Identity=23.6514522821577, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI9790143, Length=241, Percent_Identity=23.6514522821577, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI18859699, Length=254, Percent_Identity=27.5590551181102, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 31579; Mature: 31579

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGQFEQAILALMIFVIMLGMGASLTPRDFILALKRPYGLMIGVVSQYGFMPFIGFILAL
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHH
TLPVSDPIKIGILIMSCMPGGTTSNIFTYFSKGNLALSVLMTVTSTIFGVILIPIVLVVY
HCCCCCCHHHHHHHEECCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AGALDVDIPRENIIATLVLLLVPVAIGMVLRKLNANIGAVTEFMGSMLAIFFILFLVVSW
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
IPRNFAFLMETGWATYAASIALGLIGITVGYLFAKALKLHPRNARTVGLETGIQNGPLAI
HCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHCCCCCCCEEE
AIIAFTFSGAEQQAVNAVPVLYSLFIVIVSTLVTLYFRRANTSAEQKMPDSLL
EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCC
>Mature Secondary Structure
MVGQFEQAILALMIFVIMLGMGASLTPRDFILALKRPYGLMIGVVSQYGFMPFIGFILAL
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHH
TLPVSDPIKIGILIMSCMPGGTTSNIFTYFSKGNLALSVLMTVTSTIFGVILIPIVLVVY
HCCCCCCHHHHHHHEECCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AGALDVDIPRENIIATLVLLLVPVAIGMVLRKLNANIGAVTEFMGSMLAIFFILFLVVSW
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
IPRNFAFLMETGWATYAASIALGLIGITVGYLFAKALKLHPRNARTVGLETGIQNGPLAI
HCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHCCCCCCCEEE
AIIAFTFSGAEQQAVNAVPVLYSLFIVIVSTLVTLYFRRANTSAEQKMPDSLL
EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]