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The map label for this gene is sdiA [C]

Identifier: 89053644

GI number: 89053644

Start: 1115060

End: 1115791

Strand: Reverse

Name: sdiA [C]

Synonym: Jann_1153

Alternate gene names: 89053644

Gene position: 1115791-1115060 (Counterclockwise)

Preceding gene: 89053647

Following gene: 89053643

Centisome position: 25.84

GC content: 64.07

Gene sequence:

>732_bases
TTGACCTCGGTAGACGCCATCATGGAACAGATCCGCACAGCCCCGTCGCGCCGGGCGCTGTGGCAAATCATGCTGGACTT
CATGCATGACGAAGGGGTTGTGATGGGCAGCTATCATTTCGTTGATGCCGATGCCGCCTCCGTCAGGGTTGCCGCCGATG
GCTTTCCTGAGGAGTGGATCTGCGAATACCTGAACCGCAAGCTGGCGCTGATTGATCCGATCCCCGCCCTCGCGGCCCGC
ATGTCGAGGCCGTTCTACTGGCACGAAATCCAGGATCTGATCCCTCCCTCGGCGCAGACCGATGCCTATCTGGACCGGCT
GCGCGCATCAGGCCTGGGCGACGGGCTGGCGTTTTATGTGTTCGGTCCCGGCCTGCGCAACGCTTACGTGGGCCTCGGGT
TTGGCCGACCTGTCGTCGATCTTCCCCCGGAGCAGATCTTTCGCCTGCAATGCGTGGCCCAGGCCGGGCATCTGCGGGTC
TGCGAGTTGAGCGATCAGGCCCCGAAAGAGGCGGCGCTGTCGCCGCGGGAAAAGCAGGTCCTGGACTGGATCGCAAAGGG
CAAGAGCAATTCGGTCATCGCCGAGATCCTGGCCATGTCCCCGCACACCGTCGATGCCCATGTCCGCAGCATCTACCGCA
AACTGGACGTGACCGACCGCACCAGCGCGGCCCTGCGCGGCGTGGGGTCCGGCGTGCTGCAATATCCCGGGATCGACACC
GCCACGTCGTGA

Upstream 100 bases:

>100_bases
AAATGGACCGCGCCCCGCCGCCCATACGGGCCAGCCCCCCGGGCGGGAGAGTGGCGCGACGCGGCATAAACCTGTACGTT
AATGTGGAGGAGCAGCCCCC

Downstream 100 bases:

>100_bases
CAGCTTAACTCAAATTGCGGACACTTTCCTGCATTCGTATGCGCACCAGAGAATGCTGGGCGAACGGTCGATATGCACGC
AACCGCCCCCGGCCTCACGT

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MTSVDAIMEQIRTAPSRRALWQIMLDFMHDEGVVMGSYHFVDADAASVRVAADGFPEEWICEYLNRKLALIDPIPALAAR
MSRPFYWHEIQDLIPPSAQTDAYLDRLRASGLGDGLAFYVFGPGLRNAYVGLGFGRPVVDLPPEQIFRLQCVAQAGHLRV
CELSDQAPKEAALSPREKQVLDWIAKGKSNSVIAEILAMSPHTVDAHVRSIYRKLDVTDRTSAALRGVGSGVLQYPGIDT
ATS

Sequences:

>Translated_243_residues
MTSVDAIMEQIRTAPSRRALWQIMLDFMHDEGVVMGSYHFVDADAASVRVAADGFPEEWICEYLNRKLALIDPIPALAAR
MSRPFYWHEIQDLIPPSAQTDAYLDRLRASGLGDGLAFYVFGPGLRNAYVGLGFGRPVVDLPPEQIFRLQCVAQAGHLRV
CELSDQAPKEAALSPREKQVLDWIAKGKSNSVIAEILAMSPHTVDAHVRSIYRKLDVTDRTSAALRGVGSGVLQYPGIDT
ATS
>Mature_242_residues
TSVDAIMEQIRTAPSRRALWQIMLDFMHDEGVVMGSYHFVDADAASVRVAADGFPEEWICEYLNRKLALIDPIPALAARM
SRPFYWHEIQDLIPPSAQTDAYLDRLRASGLGDGLAFYVFGPGLRNAYVGLGFGRPVVDLPPEQIFRLQCVAQAGHLRVC
ELSDQAPKEAALSPREKQVLDWIAKGKSNSVIAEILAMSPHTVDAHVRSIYRKLDVTDRTSAALRGVGSGVLQYPGIDTA
TS

Specific function: Activates Cell Division By Specifically Increasing Transcription From One Of The Two Promoters That Lie Immediately Upstream Of The Ftsqaz Gene Cluster. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=189, Percent_Identity=25.3968253968254, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 26753; Mature: 26622

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSVDAIMEQIRTAPSRRALWQIMLDFMHDEGVVMGSYHFVDADAASVRVAADGFPEEWI
CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECEEEECCCCCEEEEECCCCCHHHH
CEYLNRKLALIDPIPALAARMSRPFYWHEIQDLIPPSAQTDAYLDRLRASGLGDGLAFYV
HHHHCCCEEEECCHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEE
FGPGLRNAYVGLGFGRPVVDLPPEQIFRLQCVAQAGHLRVCELSDQAPKEAALSPREKQV
ECCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCHHHHH
LDWIAKGKSNSVIAEILAMSPHTVDAHVRSIYRKLDVTDRTSAALRGVGSGVLQYPGIDT
HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEECCCCCC
ATS
CCC
>Mature Secondary Structure 
TSVDAIMEQIRTAPSRRALWQIMLDFMHDEGVVMGSYHFVDADAASVRVAADGFPEEWI
CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECEEEECCCCCEEEEECCCCCHHHH
CEYLNRKLALIDPIPALAARMSRPFYWHEIQDLIPPSAQTDAYLDRLRASGLGDGLAFYV
HHHHCCCEEEECCHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEE
FGPGLRNAYVGLGFGRPVVDLPPEQIFRLQCVAQAGHLRVCELSDQAPKEAALSPREKQV
ECCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCHHHHH
LDWIAKGKSNSVIAEILAMSPHTVDAHVRSIYRKLDVTDRTSAALRGVGSGVLQYPGIDT
HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEECCCCCC
ATS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]