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The map label for this gene is spsC [H]

Identifier: 89053614

GI number: 89053614

Start: 1082832

End: 1084034

Strand: Reverse

Name: spsC [H]

Synonym: Jann_1123

Alternate gene names: 89053614

Gene position: 1084034-1082832 (Counterclockwise)

Preceding gene: 89053615

Following gene: 89053613

Centisome position: 25.11

GC content: 64.67

Gene sequence:

>1203_bases
ATGTCTGCGCCAAATGTCTATGATGCCGAGCCCATTCCAGAGGCCGCCCGCGCCGAGATTGACCGGCTGCTGCAAAGCGG
CGACCTGTTCCGCTACACCGCGCCCGAGGATGCGCCCGTGGCCCTGCTGGAGCAGGAATTCGCCGCGATGATGGGCACCA
AATATGCGCTGGCCGTGTCCAGCTGCTCTGCCGCGCTGTTCCTGTCGCTGGAGGCGTTGGGCCTGCCCAAGGGCGCGAAA
ATCCTGATCCCGGCCTTCACCTTCGCGGCTGTGCCGTCATCCATCGTCCATGCAGGTATGCAGCCGGTCCTGTGCGAAGT
GGGCTCCAACTACCGGGTGGATATGGTTGATTTCATGGCGAAATTACCGGGTGTCCATGGGGTCCTGATCAGCCATATGC
GCGGCCATACCTCCGACATGGATGCGATTGAGGCGGCGTGTAATGCGGCGGGGATCCCGCTGATCGAAGACGCGGCGCAC
TCATTGGGCACCGAATGGCACGGGCGCAAGATCGGCACGATCGGGCGCGTGGGCTGCTTCAGTTTCCAATCCTATAAACT
GGTGAACGCGGGCGAAGGCGGCATCCTGATCACCGATGACGCAGACCTTGTGGCGCGCGCCGTGATCATGTCGGGCGCCT
ATGAGCATACGTGGAAGAAACATGCCCATGACGCGGCATTGGTGGAGGCCTTCGCCCGCTGGCAGAACAAGCTGCCGCTT
TACAATCTGCGGATGCAGAACCTCAGCGCCGCGGTGATCCGCCCGCAATTGCCCGAAGTCGCCCGCCGGGTGCGCGATGG
CCGCGCGAACCACGATTATGTGGCGGGCGTGCTGAACACCTCTCGCTGGCTGAGCGTGCCCGATCCCCTCGGCCCCGAAG
ACCGCGCACCGGATTCGATCCAGTTCAACCTCGATGAGGTCCACACCGATGCGGAGGCCCGCGCCTTTGCCGATGCTGCA
AGCGCCCGTGGCGTCACGGTGCAGATCTTCGGCCTGTCCACCGACAATGCGCGCGCGTTCTGGAACTGGCAGTTCATCCC
CGGAAAGACGCCCGACCTGCCGCAGACCCGCGCCATGCTGATGCGGGCCTGCGACGTGCGCCTGCCCGCGCGACTGACGA
AACCGGATCTCGACTTCATCGCGGGCGCGCTTCTGGCCGCCGCCGAGGACGTGAAGGGTGAGGTGCGCGCCTACGGGACC
TGA

Upstream 100 bases:

>100_bases
TTTCCGGACATTTCGACCTGACGCGATTTTGTCGCTTTTCTGTCGTGTCTCTCTGCCTATATAAGCAAAACGAAATATCA
TATTTCAAAAAGGTGAAATC

Downstream 100 bases:

>100_bases
GCGATTGGGGCACTTGAACCGCGCGCGGGCCTGGGCCAGCGTCGGGGGATGAATGATTTATCCAACGGCGCGGCCTGGAT
GGGGAGCCGCATCATCCCCA

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MSAPNVYDAEPIPEAARAEIDRLLQSGDLFRYTAPEDAPVALLEQEFAAMMGTKYALAVSSCSAALFLSLEALGLPKGAK
ILIPAFTFAAVPSSIVHAGMQPVLCEVGSNYRVDMVDFMAKLPGVHGVLISHMRGHTSDMDAIEAACNAAGIPLIEDAAH
SLGTEWHGRKIGTIGRVGCFSFQSYKLVNAGEGGILITDDADLVARAVIMSGAYEHTWKKHAHDAALVEAFARWQNKLPL
YNLRMQNLSAAVIRPQLPEVARRVRDGRANHDYVAGVLNTSRWLSVPDPLGPEDRAPDSIQFNLDEVHTDAEARAFADAA
SARGVTVQIFGLSTDNARAFWNWQFIPGKTPDLPQTRAMLMRACDVRLPARLTKPDLDFIAGALLAAAEDVKGEVRAYGT

Sequences:

>Translated_400_residues
MSAPNVYDAEPIPEAARAEIDRLLQSGDLFRYTAPEDAPVALLEQEFAAMMGTKYALAVSSCSAALFLSLEALGLPKGAK
ILIPAFTFAAVPSSIVHAGMQPVLCEVGSNYRVDMVDFMAKLPGVHGVLISHMRGHTSDMDAIEAACNAAGIPLIEDAAH
SLGTEWHGRKIGTIGRVGCFSFQSYKLVNAGEGGILITDDADLVARAVIMSGAYEHTWKKHAHDAALVEAFARWQNKLPL
YNLRMQNLSAAVIRPQLPEVARRVRDGRANHDYVAGVLNTSRWLSVPDPLGPEDRAPDSIQFNLDEVHTDAEARAFADAA
SARGVTVQIFGLSTDNARAFWNWQFIPGKTPDLPQTRAMLMRACDVRLPARLTKPDLDFIAGALLAAAEDVKGEVRAYGT
>Mature_399_residues
SAPNVYDAEPIPEAARAEIDRLLQSGDLFRYTAPEDAPVALLEQEFAAMMGTKYALAVSSCSAALFLSLEALGLPKGAKI
LIPAFTFAAVPSSIVHAGMQPVLCEVGSNYRVDMVDFMAKLPGVHGVLISHMRGHTSDMDAIEAACNAAGIPLIEDAAHS
LGTEWHGRKIGTIGRVGCFSFQSYKLVNAGEGGILITDDADLVARAVIMSGAYEHTWKKHAHDAALVEAFARWQNKLPLY
NLRMQNLSAAVIRPQLPEVARRVRDGRANHDYVAGVLNTSRWLSVPDPLGPEDRAPDSIQFNLDEVHTDAEARAFADAAS
ARGVTVQIFGLSTDNARAFWNWQFIPGKTPDLPQTRAMLMRACDVRLPARLTKPDLDFIAGALLAAAEDVKGEVRAYGT

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=376, Percent_Identity=26.063829787234, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI2367285, Length=229, Percent_Identity=29.6943231441048, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 43232; Mature: 43101

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPNVYDAEPIPEAARAEIDRLLQSGDLFRYTAPEDAPVALLEQEFAAMMGTKYALAVS
CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCHHEEEHH
SCSAALFLSLEALGLPKGAKILIPAFTFAAVPSSIVHAGMQPVLCEVGSNYRVDMVDFMA
HHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCHHHHHCCCCHHHHHCCCCCCCHHHHHHH
KLPGVHGVLISHMRGHTSDMDAIEAACNAAGIPLIEDAAHSLGTEWHGRKIGTIGRVGCF
HCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEE
SFQSYKLVNAGEGGILITDDADLVARAVIMSGAYEHTWKKHAHDAALVEAFARWQNKLPL
CCCCEEEEECCCCCEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCE
YNLRMQNLSAAVIRPQLPEVARRVRDGRANHDYVAGVLNTSRWLSVPDPLGPEDRAPDSI
EEEEHHCCCHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCE
QFNLDEVHTDAEARAFADAASARGVTVQIFGLSTDNARAFWNWQFIPGKTPDLPQTRAML
EECHHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHH
MRACDVRLPARLTKPDLDFIAGALLAAAEDVKGEVRAYGT
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCC
>Mature Secondary Structure 
SAPNVYDAEPIPEAARAEIDRLLQSGDLFRYTAPEDAPVALLEQEFAAMMGTKYALAVS
CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCHHEEEHH
SCSAALFLSLEALGLPKGAKILIPAFTFAAVPSSIVHAGMQPVLCEVGSNYRVDMVDFMA
HHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCHHHHHCCCCHHHHHCCCCCCCHHHHHHH
KLPGVHGVLISHMRGHTSDMDAIEAACNAAGIPLIEDAAHSLGTEWHGRKIGTIGRVGCF
HCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEE
SFQSYKLVNAGEGGILITDDADLVARAVIMSGAYEHTWKKHAHDAALVEAFARWQNKLPL
CCCCEEEEECCCCCEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCE
YNLRMQNLSAAVIRPQLPEVARRVRDGRANHDYVAGVLNTSRWLSVPDPLGPEDRAPDSI
EEEEHHCCCHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCE
QFNLDEVHTDAEARAFADAASARGVTVQIFGLSTDNARAFWNWQFIPGKTPDLPQTRAML
EECHHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHH
MRACDVRLPARLTKPDLDFIAGALLAAAEDVKGEVRAYGT
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]