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The map label for this gene is lpsJ [H]

Identifier: 89053496

GI number: 89053496

Start: 961366

End: 961989

Strand: Reverse

Name: lpsJ [H]

Synonym: Jann_1005

Alternate gene names: 89053496

Gene position: 961989-961366 (Counterclockwise)

Preceding gene: 89053497

Following gene: 89053495

Centisome position: 22.28

GC content: 60.9

Gene sequence:

>624_bases
ATGTGGGACCGCAACCAGATGGCCGCCCGTGCGGCGCAGGAACTGCAAGACGGCTGGTATGTGAACCTTGGCATCGGCAT
CCCGACGCTGGTCTCCAACTACATCCCCGATGGAATCGAAGTGACCCTGCAATCCGAGAACGGCATGCTTGGCATGGGTC
CCTTCCCGATTGAAGGCGAAGAGGATGCGGATCTGATCAACGCGGGCAAGCAAACGATCACGGAGCTTCCCCACACCTCT
TACTTCGACAGTTCGCAATCGTTTGGCATGATCCGGGGCGGCAAAATCGCCATGGCGATCCTGGGCGCGATGGAAGTGGC
CGAGAATGGCGACCTGGCGAACTGGATGATCCCCGGCAAGCTGGTCAAGGGCATGGGCGGCGCGATGGATCTTGTGGCGG
GCGTGGGCCGCGTGGTCGTGGTCATGGATCACACCAACAAGCACGGCGACAGCAAGGTGCTGCGGGAATGCACCCTCCCG
TTGACGGGCAAGGGCGTCGTGGACCGGATCATCACCAATATGGGCGTTCTGGATGTGGTCGAGGGCGGCCTGAAAATCGT
TGAGACCGCAGATGGTGTGACAGAAGATGATCTGCGGGCCGCCACCCAGGCGACCATTGTCTGA

Upstream 100 bases:

>100_bases
GCCATATGAACGCCGATTTCGGCGCTTCGCTTTTCCGGGCCTTTGCGGTAGCAATCGGACAGTAATCGAAGCTGGCACGC
CCGAGATAAGGAGAGACCCC

Downstream 100 bases:

>100_bases
AAACCCTCCGCACCGCGCCCCCAACGGCGCCCTGACCCTGCAAACCGTCCCCATGCCCGGCGACACCAACGCGGGCGGCG
ACGTCTTCGGCGGCTGGGTG

Product: butyryl-CoA:acetate CoA transferase

Products: NA

Alternate protein names: OXCT B; Succinyl CoA:3-oxoacid CoA-transferase [H]

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MWDRNQMAARAAQELQDGWYVNLGIGIPTLVSNYIPDGIEVTLQSENGMLGMGPFPIEGEEDADLINAGKQTITELPHTS
YFDSSQSFGMIRGGKIAMAILGAMEVAENGDLANWMIPGKLVKGMGGAMDLVAGVGRVVVVMDHTNKHGDSKVLRECTLP
LTGKGVVDRIITNMGVLDVVEGGLKIVETADGVTEDDLRAATQATIV

Sequences:

>Translated_207_residues
MWDRNQMAARAAQELQDGWYVNLGIGIPTLVSNYIPDGIEVTLQSENGMLGMGPFPIEGEEDADLINAGKQTITELPHTS
YFDSSQSFGMIRGGKIAMAILGAMEVAENGDLANWMIPGKLVKGMGGAMDLVAGVGRVVVVMDHTNKHGDSKVLRECTLP
LTGKGVVDRIITNMGVLDVVEGGLKIVETADGVTEDDLRAATQATIV
>Mature_207_residues
MWDRNQMAARAAQELQDGWYVNLGIGIPTLVSNYIPDGIEVTLQSENGMLGMGPFPIEGEEDADLINAGKQTITELPHTS
YFDSSQSFGMIRGGKIAMAILGAMEVAENGDLANWMIPGKLVKGMGGAMDLVAGVGRVVVVMDHTNKHGDSKVLRECTLP
LTGKGVVDRIITNMGVLDVVEGGLKIVETADGVTEDDLRAATQATIV

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=201, Percent_Identity=56.7164179104478, Blast_Score=230, Evalue=6e-61,
Organism=Homo sapiens, GI11545841, Length=201, Percent_Identity=57.2139303482587, Blast_Score=224, Evalue=3e-59,
Organism=Escherichia coli, GI1788552, Length=201, Percent_Identity=48.7562189054726, Blast_Score=205, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI17531517, Length=202, Percent_Identity=58.4158415841584, Blast_Score=236, Evalue=4e-63,
Organism=Drosophila melanogaster, GI21358325, Length=205, Percent_Identity=58.5365853658537, Blast_Score=241, Evalue=2e-64,
Organism=Drosophila melanogaster, GI24655794, Length=205, Percent_Identity=58.5365853658537, Blast_Score=240, Evalue=4e-64,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165
- InterPro:   IPR004164 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.5 [H]

Molecular weight: Translated: 22001; Mature: 22001

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWDRNQMAARAAQELQDGWYVNLGIGIPTLVSNYIPDGIEVTLQSENGMLGMGPFPIEGE
CCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCEECCCCCCCCCC
EDADLINAGKQTITELPHTSYFDSSQSFGMIRGGKIAMAILGAMEVAENGDLANWMIPGK
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCEEECCHH
LVKGMGGAMDLVAGVGRVVVVMDHTNKHGDSKVLRECTLPLTGKGVVDRIITNMGVLDVV
HHHCCCHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHH
EGGLKIVETADGVTEDDLRAATQATIV
HCCEEEEECCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MWDRNQMAARAAQELQDGWYVNLGIGIPTLVSNYIPDGIEVTLQSENGMLGMGPFPIEGE
CCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCEECCCCCCCCCC
EDADLINAGKQTITELPHTSYFDSSQSFGMIRGGKIAMAILGAMEVAENGDLANWMIPGK
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCEEECCHH
LVKGMGGAMDLVAGVGRVVVVMDHTNKHGDSKVLRECTLPLTGKGVVDRIITNMGVLDVV
HHHCCCHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHH
EGGLKIVETADGVTEDDLRAATQATIV
HCCEEEEECCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9385134 [H]