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The map label for this gene is gspD [C]

Identifier: 89053488

GI number: 89053488

Start: 955609

End: 957009

Strand: Reverse

Name: gspD [C]

Synonym: Jann_0997

Alternate gene names: 89053488

Gene position: 957009-955609 (Counterclockwise)

Preceding gene: 89053489

Following gene: 89053487

Centisome position: 22.16

GC content: 62.31

Gene sequence:

>1401_bases
ATGAGCATGACTAATATTTTGCGCGCGTGCCTTCTGGGCGCAGCCGCACTTCTTTTCCAACCCATCTCCGGCGCACAGGC
GCAAGGACTTCGCGTGGTCGAGGGCGAAAGCACCGGCACCCTGCGCGTGCCGATGAACCGCGCCGTCGTGGTGGAGGCCG
AAATGCTCTTTGCAGAGCTCTCCGTGGCCAACCCCGCAATCGCAGACATCGCGACATTGTCGGAGCGATCCATCTACGTT
CTGGGCCGCGCGCCCGGGCGCACAACGATGACGCTTTTGGGGGCCGACGGATCCCTCATCGCCAATGTCGAAATTCAGGT
CGTCCCCGACGTGGCCGAGCTGCGTGAACGTCTGCGCGAAATCATCCCCGGCGAGCCGGTGGAGGTTCGCACCGCCAACG
ACGGCATCGTTCTGTCGGGCACCGTCGGTTCTGCATTTGCAGTCGACCGCGCGATGGAACTGGCCGAGCGGTACGCGCCA
GGCCGTATTTCCAACCTCATGATGGTCGGTGGCCAGCAACAGGTCATGTTGCAGGTTCGGTTTGCGGAAATGCAGCGCAC
CGTGCGTCAGGAACTCTCCGCCTCCCTTGGGATTGGCTCGACGGGTGGCAATTTCGGTACCAGCGTTGGTGCCGGTAACC
TGCAGGGCGGCACTGGCTTTGGCACCGGCAACCTTCCCGGAGGCCTTGACGGCCGCAACGGCGGAATTGGGGTTAGTTTT
GCGGCGGGCGGTCTTCAACTGTCGGTTCTTTTGGAAGCGCTGGAATCCAACGGCATGGTGCGTACCCTGGCCGAGCCCAA
TCTGACGGCTCTCTCGGGTGCCACGGCCTCCTTCCTGGCTGGCGGGCAATTCCCCGTCCCCACTGAATCTGAAAGTGGTG
GCACAACGATCGAATTCGTCGACTTTGGTGTGCAGCTCGATTTCACCCCAACAGTCGTTGGCGATCACGTCATCAATCTG
GCACTGGACGCCGAGATCTCCTCGATCGGGGAAATCATTGCGACCACCGGCGCACCGGCCATCAACACGCGCAACGCCTC
CACCGTGGTCGAGATGCGCGACGGCGACAGCTTCGCAATTGCGGGTCTGTTGCAGGATGACTTCACCAACTCCGTGGCGG
AAGTGCCCTGGCTTGGGGATTTGCCGGTTCTTGGCGCGCTCTTCCGCTCCGCCTCCTACAGCCGGTCTCAGTCTGAACTT
GTGATCATCATCACCGCGCATCTGGTCAGCCCGGTTAACGGCGAGGCCCTGGCATTGCCCACGGACCGCGTCCGCATTCC
GACCGAAAGCGAATTGTTCTTCCAGGGACAGGTGACTGGCAGCTCGCCGCGCCCCGGCACGGCCGCAGGCGATGTGGCGC
AACAGGATTTCTCCGGCTCCTATGGCTATGTGCTGGATTGA

Upstream 100 bases:

>100_bases
AACATCATGATTCTTGCGCGAAAAGCCGAAGTAGGGCAACGTGCTCCAAAGGGCGGCCATTTGGACAACGCCCAAAACCG
TGGCATAGAGGCAGGTCACA

Downstream 100 bases:

>100_bases
GAGGGACACAGATCATGACTAAAGCACTCCATTCCCGCCGCTCCGTTCTGGCCAGCCTGGGCTCTACCCTCGCGCTGACC
GCCTGCGGATCCACCTTCGT

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 465

Protein sequence:

>466_residues
MSMTNILRACLLGAAALLFQPISGAQAQGLRVVEGESTGTLRVPMNRAVVVEAEMLFAELSVANPAIADIATLSERSIYV
LGRAPGRTTMTLLGADGSLIANVEIQVVPDVAELRERLREIIPGEPVEVRTANDGIVLSGTVGSAFAVDRAMELAERYAP
GRISNLMMVGGQQQVMLQVRFAEMQRTVRQELSASLGIGSTGGNFGTSVGAGNLQGGTGFGTGNLPGGLDGRNGGIGVSF
AAGGLQLSVLLEALESNGMVRTLAEPNLTALSGATASFLAGGQFPVPTESESGGTTIEFVDFGVQLDFTPTVVGDHVINL
ALDAEISSIGEIIATTGAPAINTRNASTVVEMRDGDSFAIAGLLQDDFTNSVAEVPWLGDLPVLGALFRSASYSRSQSEL
VIIITAHLVSPVNGEALALPTDRVRIPTESELFFQGQVTGSSPRPGTAAGDVAQQDFSGSYGYVLD

Sequences:

>Translated_466_residues
MSMTNILRACLLGAAALLFQPISGAQAQGLRVVEGESTGTLRVPMNRAVVVEAEMLFAELSVANPAIADIATLSERSIYV
LGRAPGRTTMTLLGADGSLIANVEIQVVPDVAELRERLREIIPGEPVEVRTANDGIVLSGTVGSAFAVDRAMELAERYAP
GRISNLMMVGGQQQVMLQVRFAEMQRTVRQELSASLGIGSTGGNFGTSVGAGNLQGGTGFGTGNLPGGLDGRNGGIGVSF
AAGGLQLSVLLEALESNGMVRTLAEPNLTALSGATASFLAGGQFPVPTESESGGTTIEFVDFGVQLDFTPTVVGDHVINL
ALDAEISSIGEIIATTGAPAINTRNASTVVEMRDGDSFAIAGLLQDDFTNSVAEVPWLGDLPVLGALFRSASYSRSQSEL
VIIITAHLVSPVNGEALALPTDRVRIPTESELFFQGQVTGSSPRPGTAAGDVAQQDFSGSYGYVLD
>Mature_465_residues
SMTNILRACLLGAAALLFQPISGAQAQGLRVVEGESTGTLRVPMNRAVVVEAEMLFAELSVANPAIADIATLSERSIYVL
GRAPGRTTMTLLGADGSLIANVEIQVVPDVAELRERLREIIPGEPVEVRTANDGIVLSGTVGSAFAVDRAMELAERYAPG
RISNLMMVGGQQQVMLQVRFAEMQRTVRQELSASLGIGSTGGNFGTSVGAGNLQGGTGFGTGNLPGGLDGRNGGIGVSFA
AGGLQLSVLLEALESNGMVRTLAEPNLTALSGATASFLAGGQFPVPTESESGGTTIEFVDFGVQLDFTPTVVGDHVINLA
LDAEISSIGEIIATTGAPAINTRNASTVVEMRDGDSFAIAGLLQDDFTNSVAEVPWLGDLPVLGALFRSASYSRSQSELV
IIITAHLVSPVNGEALALPTDRVRIPTESELFFQGQVTGSSPRPGTAAGDVAQQDFSGSYGYVLD

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=210, Percent_Identity=29.5238095238095, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789793, Length=167, Percent_Identity=32.3353293413174, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 48255; Mature: 48124

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMTNILRACLLGAAALLFQPISGAQAQGLRVVEGESTGTLRVPMNRAVVVEAEMLFAEL
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCEEEEEHHHHHHHH
SVANPAIADIATLSERSIYVLGRAPGRTTMTLLGADGSLIANVEIQVVPDVAELRERLRE
HCCCCCHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEEECCCHHHHHHHHHH
IIPGEPVEVRTANDGIVLSGTVGSAFAVDRAMELAERYAPGRISNLMMVGGQQQVMLQVR
HCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEEEH
FAEMQRTVRQELSASLGIGSTGGNFGTSVGAGNLQGGTGFGTGNLPGGLDGRNGGIGVSF
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
AAGGLQLSVLLEALESNGMVRTLAEPNLTALSGATASFLAGGQFPVPTESESGGTTIEFV
ECCCCHHHHHHHHHHCCCEEEEECCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCEEEEE
DFGVQLDFTPTVVGDHVINLALDAEISSIGEIIATTGAPAINTRNASTVVEMRDGDSFAI
EECEEEECCCCHHCCEEEEEEECCCHHHHHHHHHCCCCCCEECCCCEEEEEEECCCCEEE
AGLLQDDFTNSVAEVPWLGDLPVLGALFRSASYSRSQSELVIIITAHLVSPVNGEALALP
EEEHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCEEECC
TDRVRIPTESELFFQGQVTGSSPRPGTAAGDVAQQDFSGSYGYVLD
CCCEECCCCCCEEEEEEECCCCCCCCCCCCCHHHHCCCCCCCEEEC
>Mature Secondary Structure 
SMTNILRACLLGAAALLFQPISGAQAQGLRVVEGESTGTLRVPMNRAVVVEAEMLFAEL
CHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCEEEEEHHHHHHHH
SVANPAIADIATLSERSIYVLGRAPGRTTMTLLGADGSLIANVEIQVVPDVAELRERLRE
HCCCCCHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEEECCCHHHHHHHHHH
IIPGEPVEVRTANDGIVLSGTVGSAFAVDRAMELAERYAPGRISNLMMVGGQQQVMLQVR
HCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEEEH
FAEMQRTVRQELSASLGIGSTGGNFGTSVGAGNLQGGTGFGTGNLPGGLDGRNGGIGVSF
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
AAGGLQLSVLLEALESNGMVRTLAEPNLTALSGATASFLAGGQFPVPTESESGGTTIEFV
ECCCCHHHHHHHHHHCCCEEEEECCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCEEEEE
DFGVQLDFTPTVVGDHVINLALDAEISSIGEIIATTGAPAINTRNASTVVEMRDGDSFAI
EECEEEECCCCHHCCEEEEEEECCCHHHHHHHHHCCCCCCEECCCCEEEEEEECCCCEEE
AGLLQDDFTNSVAEVPWLGDLPVLGALFRSASYSRSQSELVIIITAHLVSPVNGEALALP
EEEHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCEEECC
TDRVRIPTESELFFQGQVTGSSPRPGTAAGDVAQQDFSGSYGYVLD
CCCEECCCCCCEEEEEEECCCCCCCCCCCCCHHHHCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]