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The map label for this gene is lhr [C]

Identifier: 89053477

GI number: 89053477

Start: 941928

End: 944351

Strand: Reverse

Name: lhr [C]

Synonym: Jann_0986

Alternate gene names: 89053477

Gene position: 944351-941928 (Counterclockwise)

Preceding gene: 89053479

Following gene: 89053476

Centisome position: 21.87

GC content: 61.51

Gene sequence:

>2424_bases
ATGACACCCGCCCTCCCCCCTCAGATTGAGCGCTGGTTTACCGCCCGAGGGTGGTCGATCCATCCCCATCAACGCGAGAT
GCTCGCGCTGGCCGATCAGCCCTGTCAGCTGTTGATCGCACCCACGGGTGGCGGCAAAACCATGGCCGGGTTTTTGCCCA
CTTTGGCGGAATTGGCGGATGGCACACACGATGGGCTGCATACGCTTTACATCAGTCCTCTCAAGGCCTTAGCCGCCGAT
ATCAAGCGAAACCTCATTGGTCCGGTGGATGAAATGGGCCTGCCCATCCGTATTGAGGACCGCACCGGCGACACCCCTTC
CAGCCGGAAGCGCCGCCAACGCGCAGATCCCCCACATATTCTTCTGACGACGCCTGAAAGCCTGGCCTTGCTCACCTCCT
ACGAGGACGCGGCGCGCACGTTCAAAGGGCTCCAGCGGGTGATTGTCGATGAAATTCATGCGCTTAGCGAGTCCAAGCGC
GGCGATCAGCTGATGCTCGCGCTGTCTCGCCTGTCAACGCTCGCGCCCGGCCTCCGGCGCGTGGGGCTGTCAGCGACGGT
CGAAGATCCGGACGCCATCGCCCGCATCCTTGCCCGCAACCCTGATCCCTGCGCAATCCTTCAGGCCGATCCCGGCCCCG
ACCCCGACATTTCAATGCTGACCACAGACGCCCCACCGCCCTGGTCCGGGGGCGGCGGGAAATACGCGATGGAGGCCGTG
CTGGAGCAAGTAAAGGCCCATAATACCACGTTAATTTTTCATAACACCCGCGCCCAGGCCGAGATCTTCTTTCATCACCT
TTGGCTATCCAACGAGGATGAGATCCCCATCGGCATCCACCACGGTGCGTTGTCACGGGAACAACGCGAACGGGTCGAAC
AGGCTATGGTCGCGGGCGACCTGAAGGCCATCGTTTGCACCGGTAGTCTCGATCTCGGCATCGATTGGGGCGACGTGGAT
CTGGTGATCCAGGTGGGCGCACCCAAGAACGTCAAGCGGTTGGTGCAGCGGATAGGGCGCGCCAATCACCGCTATAACGC
GCCCTCTAAGGCTTTGATTGTGCCCGCCAATCGGTTTGAAGTCATCGAGTGTATCGCCGCGCTTCAGGCCGTCCGGGACC
ACACATTGGACGGTGACACCGACCATACCGGCCCTTTGGATGTGCTTTGCCAGCATATCCTGATCCGCGCCTGCGCCGGA
CCGTTTACGGGTGATGATCTCTACGCCGAGGTCACAACCGCAGGCGCGTATACCCACCTGCCGCGCGAGATGTTCGAGCG
TTGCGTGGATTTCGTGGCCACCGGCGGCTATGCCCTGCGCGCCTATGATCAATGGCAGCGGCTTGTCCAAAACGGGGACG
AATACCGCCTGCGCGATCCGCGTGCCACCACCCGCATTCGCATGAATATCGGCACCATCGTCGACGCAGATAAGATGCCC
GTGAGGATGCAAAAAACCCGTGGGGGCAAGCCTTTAGGGGAAGTGGAGGAATACTTCGCCTCCACCCTGCGCAAAGGCGA
TACGTTCCTTATCGGCGGAAAAATCGTCCGCTATGAGGGGATGCGCGAAATGACGGTAGAGGTCTCCCGCAGCTCCACCC
AGAAGCCCAAGATCGCGACGTTCATGGGCACGAAATTCGCCACCTCGACACAGCTGAGCGACCGCATTCTGACCATGTTT
CGCCAGGATGACTGGCCCGAACTGCCCGATCACACACGCGACTGGCTGCACCTGCATCGCAAGGTCTCGCAGCTGCCTGA
GAAGGATCGCCTGTTGGTCGAGACCTTCCCGCACGACGGGCGGCAGCACTTGGTGGCCTACGGCTTTGCGGGCCGAAACG
CGCAACAGACATTGGGTCTGCTGCTGACGCACAGGATGGAAACCGAACGCCTCAACCCGATGGGCTTCGTGGCCACCGAC
TATGCGACCATGGTCTGGGGGCTTGATGAAGTCACTGATCCCAAACCGCTTTTCAGCCACGAGACCCTTCTGGCGACGAT
GGAGACCTGGCTGGCAGACAACGCGGTGATGAAGCGGACGTTCAAGAGCAGCGCGATCATCGCGGGCCTTGTGGACCGGT
CCATGCCCGGCGGCAAACGCAAGACGGGGCGCCAGGCCACGTTCTCAACCGATATCCTGTATGACACTCTGCGCAAGTAT
GACCCGGATCATGTGATGATGGAGATCACGCGGCAGGAGGCGATGCGCGGCCTTGTGGATTTCGGCCGGATTGAAGGCAT
GTTGGACCGGATCGGCGACCGTATAGACCACCGCCCCCTCCCCCGCGTCAGCCCCCTGGCCGCACCCCTGTTTCTGGAAG
CCGGGCGCGTTCCCGTTCAAGGACTCGCCAATGAGCGCTTGCTGGAAGAGGAAACGCAGCGCCTGATGGAGACGGCGGGC
CTGTCATTCGGACCCGCGCAATGA

Upstream 100 bases:

>100_bases
CCATAGCTTTGCCATCAAGCCCGGTGTTTTCTGAATTGATATACTATTGATATACCCCGAGCCCCGTGACGCGCCCCGAT
CCGCGCCCTATCTATGGTCC

Downstream 100 bases:

>100_bases
CGCTTGCCTGAGGCCGCCTCCCGAAGCTATGAACGAACCATGAACACCCTTCCCTTTACATTTTGCGGTGCGGACCTGTG
CGCATTGCCTTCGGGCGCCG

Product: DEAD/DEAH box helicase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 807; Mature: 806

Protein sequence:

>807_residues
MTPALPPQIERWFTARGWSIHPHQREMLALADQPCQLLIAPTGGGKTMAGFLPTLAELADGTHDGLHTLYISPLKALAAD
IKRNLIGPVDEMGLPIRIEDRTGDTPSSRKRRQRADPPHILLTTPESLALLTSYEDAARTFKGLQRVIVDEIHALSESKR
GDQLMLALSRLSTLAPGLRRVGLSATVEDPDAIARILARNPDPCAILQADPGPDPDISMLTTDAPPPWSGGGGKYAMEAV
LEQVKAHNTTLIFHNTRAQAEIFFHHLWLSNEDEIPIGIHHGALSREQRERVEQAMVAGDLKAIVCTGSLDLGIDWGDVD
LVIQVGAPKNVKRLVQRIGRANHRYNAPSKALIVPANRFEVIECIAALQAVRDHTLDGDTDHTGPLDVLCQHILIRACAG
PFTGDDLYAEVTTAGAYTHLPREMFERCVDFVATGGYALRAYDQWQRLVQNGDEYRLRDPRATTRIRMNIGTIVDADKMP
VRMQKTRGGKPLGEVEEYFASTLRKGDTFLIGGKIVRYEGMREMTVEVSRSSTQKPKIATFMGTKFATSTQLSDRILTMF
RQDDWPELPDHTRDWLHLHRKVSQLPEKDRLLVETFPHDGRQHLVAYGFAGRNAQQTLGLLLTHRMETERLNPMGFVATD
YATMVWGLDEVTDPKPLFSHETLLATMETWLADNAVMKRTFKSSAIIAGLVDRSMPGGKRKTGRQATFSTDILYDTLRKY
DPDHVMMEITRQEAMRGLVDFGRIEGMLDRIGDRIDHRPLPRVSPLAAPLFLEAGRVPVQGLANERLLEEETQRLMETAG
LSFGPAQ

Sequences:

>Translated_807_residues
MTPALPPQIERWFTARGWSIHPHQREMLALADQPCQLLIAPTGGGKTMAGFLPTLAELADGTHDGLHTLYISPLKALAAD
IKRNLIGPVDEMGLPIRIEDRTGDTPSSRKRRQRADPPHILLTTPESLALLTSYEDAARTFKGLQRVIVDEIHALSESKR
GDQLMLALSRLSTLAPGLRRVGLSATVEDPDAIARILARNPDPCAILQADPGPDPDISMLTTDAPPPWSGGGGKYAMEAV
LEQVKAHNTTLIFHNTRAQAEIFFHHLWLSNEDEIPIGIHHGALSREQRERVEQAMVAGDLKAIVCTGSLDLGIDWGDVD
LVIQVGAPKNVKRLVQRIGRANHRYNAPSKALIVPANRFEVIECIAALQAVRDHTLDGDTDHTGPLDVLCQHILIRACAG
PFTGDDLYAEVTTAGAYTHLPREMFERCVDFVATGGYALRAYDQWQRLVQNGDEYRLRDPRATTRIRMNIGTIVDADKMP
VRMQKTRGGKPLGEVEEYFASTLRKGDTFLIGGKIVRYEGMREMTVEVSRSSTQKPKIATFMGTKFATSTQLSDRILTMF
RQDDWPELPDHTRDWLHLHRKVSQLPEKDRLLVETFPHDGRQHLVAYGFAGRNAQQTLGLLLTHRMETERLNPMGFVATD
YATMVWGLDEVTDPKPLFSHETLLATMETWLADNAVMKRTFKSSAIIAGLVDRSMPGGKRKTGRQATFSTDILYDTLRKY
DPDHVMMEITRQEAMRGLVDFGRIEGMLDRIGDRIDHRPLPRVSPLAAPLFLEAGRVPVQGLANERLLEEETQRLMETAG
LSFGPAQ
>Mature_806_residues
TPALPPQIERWFTARGWSIHPHQREMLALADQPCQLLIAPTGGGKTMAGFLPTLAELADGTHDGLHTLYISPLKALAADI
KRNLIGPVDEMGLPIRIEDRTGDTPSSRKRRQRADPPHILLTTPESLALLTSYEDAARTFKGLQRVIVDEIHALSESKRG
DQLMLALSRLSTLAPGLRRVGLSATVEDPDAIARILARNPDPCAILQADPGPDPDISMLTTDAPPPWSGGGGKYAMEAVL
EQVKAHNTTLIFHNTRAQAEIFFHHLWLSNEDEIPIGIHHGALSREQRERVEQAMVAGDLKAIVCTGSLDLGIDWGDVDL
VIQVGAPKNVKRLVQRIGRANHRYNAPSKALIVPANRFEVIECIAALQAVRDHTLDGDTDHTGPLDVLCQHILIRACAGP
FTGDDLYAEVTTAGAYTHLPREMFERCVDFVATGGYALRAYDQWQRLVQNGDEYRLRDPRATTRIRMNIGTIVDADKMPV
RMQKTRGGKPLGEVEEYFASTLRKGDTFLIGGKIVRYEGMREMTVEVSRSSTQKPKIATFMGTKFATSTQLSDRILTMFR
QDDWPELPDHTRDWLHLHRKVSQLPEKDRLLVETFPHDGRQHLVAYGFAGRNAQQTLGLLLTHRMETERLNPMGFVATDY
ATMVWGLDEVTDPKPLFSHETLLATMETWLADNAVMKRTFKSSAIIAGLVDRSMPGGKRKTGRQATFSTDILYDTLRKYD
PDHVMMEITRQEAMRGLVDFGRIEGMLDRIGDRIDHRPLPRVSPLAAPLFLEAGRVPVQGLANERLLEEETQRLMETAGL
SFGPAQ

Specific function: Unknown

COG id: COG1201

COG function: function code R; Lhr-like helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1787942, Length=810, Percent_Identity=27.9012345679012, Blast_Score=225, Evalue=8e-60,
Organism=Caenorhabditis elegans, GI17537519, Length=337, Percent_Identity=25.2225519287834, Blast_Score=74, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI9755332, Length=349, Percent_Identity=26.647564469914, Blast_Score=96, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6321267, Length=301, Percent_Identity=24.5847176079734, Blast_Score=71, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR013701
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR017170 [H]

Pfam domain/function: PF00270 DEAD; PF08494 DEAD_assoc; PF00271 Helicase_C [H]

EC number: 3.6.1.-

Molecular weight: Translated: 89892; Mature: 89761

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPALPPQIERWFTARGWSIHPHQREMLALADQPCQLLIAPTGGGKTMAGFLPTLAELAD
CCCCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCC
GTHDGLHTLYISPLKALAADIKRNLIGPVDEMGLPIRIEDRTGDTPSSRKRRQRADPPHI
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCCHHHHHHHCCCCCEE
LLTTPESLALLTSYEDAARTFKGLQRVIVDEIHALSESKRGDQLMLALSRLSTLAPGLRR
EEECCCHHEEHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHH
VGLSATVEDPDAIARILARNPDPCAILQADPGPDPDISMLTTDAPPPWSGGGGKYAMEAV
CCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHHH
LEQVKAHNTTLIFHNTRAQAEIFFHHLWLSNEDEIPIGIHHGALSREQRERVEQAMVAGD
HHHHHHCCCEEEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
LKAIVCTGSLDLGIDWGDVDLVIQVGAPKNVKRLVQRIGRANHRYNAPSKALIVPANRFE
CEEEEEECCCEECCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHH
VIECIAALQAVRDHTLDGDTDHTGPLDVLCQHILIRACAGPFTGDDLYAEVTTAGAYTHL
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHH
PREMFERCVDFVATGGYALRAYDQWQRLVQNGDEYRLRDPRATTRIRMNIGTIVDADKMP
HHHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCEEECCCCCCEEEEEEECCEECCCCCC
VRMQKTRGGKPLGEVEEYFASTLRKGDTFLIGGKIVRYEGMREMTVEVSRSSTQKPKIAT
EEEHHCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEECCCHHHEEEECCCCCCCCCEEE
FMGTKFATSTQLSDRILTMFRQDDWPELPDHTRDWLHLHRKVSQLPEKDRLLVETFPHDG
ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
RQHLVAYGFAGRNAQQTLGLLLTHRMETERLNPMGFVATDYATMVWGLDEVTDPKPLFSH
CCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCHHCCCCCCCCCH
ETLLATMETWLADNAVMKRTFKSSAIIAGLVDRSMPGGKRKTGRQATFSTDILYDTLRKY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHC
DPDHVMMEITRQEAMRGLVDFGRIEGMLDRIGDRIDHRPLPRVSPLAAPLFLEAGRVPVQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHH
GLANERLLEEETQRLMETAGLSFGPAQ
HHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TPALPPQIERWFTARGWSIHPHQREMLALADQPCQLLIAPTGGGKTMAGFLPTLAELAD
CCCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCC
GTHDGLHTLYISPLKALAADIKRNLIGPVDEMGLPIRIEDRTGDTPSSRKRRQRADPPHI
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCCHHHHHHHCCCCCEE
LLTTPESLALLTSYEDAARTFKGLQRVIVDEIHALSESKRGDQLMLALSRLSTLAPGLRR
EEECCCHHEEHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHH
VGLSATVEDPDAIARILARNPDPCAILQADPGPDPDISMLTTDAPPPWSGGGGKYAMEAV
CCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHHHH
LEQVKAHNTTLIFHNTRAQAEIFFHHLWLSNEDEIPIGIHHGALSREQRERVEQAMVAGD
HHHHHHCCCEEEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
LKAIVCTGSLDLGIDWGDVDLVIQVGAPKNVKRLVQRIGRANHRYNAPSKALIVPANRFE
CEEEEEECCCEECCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHH
VIECIAALQAVRDHTLDGDTDHTGPLDVLCQHILIRACAGPFTGDDLYAEVTTAGAYTHL
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHH
PREMFERCVDFVATGGYALRAYDQWQRLVQNGDEYRLRDPRATTRIRMNIGTIVDADKMP
HHHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCEEECCCCCCEEEEEEECCEECCCCCC
VRMQKTRGGKPLGEVEEYFASTLRKGDTFLIGGKIVRYEGMREMTVEVSRSSTQKPKIAT
EEEHHCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEECCCHHHEEEECCCCCCCCCEEE
FMGTKFATSTQLSDRILTMFRQDDWPELPDHTRDWLHLHRKVSQLPEKDRLLVETFPHDG
ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
RQHLVAYGFAGRNAQQTLGLLLTHRMETERLNPMGFVATDYATMVWGLDEVTDPKPLFSH
CCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCHHCCCCCCCCCH
ETLLATMETWLADNAVMKRTFKSSAIIAGLVDRSMPGGKRKTGRQATFSTDILYDTLRKY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHC
DPDHVMMEITRQEAMRGLVDFGRIEGMLDRIGDRIDHRPLPRVSPLAAPLFLEAGRVPVQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHH
GLANERLLEEETQRLMETAGLSFGPAQ
HHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on acid anhydrides [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]