| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89053440
Identifier: 89053440
GI number: 89053440
Start: 907146
End: 907577
Strand: Reverse
Name: 89053440
Synonym: Jann_0949
Alternate gene names: NA
Gene position: 907577-907146 (Counterclockwise)
Preceding gene: 89053441
Following gene: 89053435
Centisome position: 21.02
GC content: 64.58
Gene sequence:
>432_bases GTGGCTGCCACTACCCATATGTTGAAGCTGTGCGTCGGCGCGACCTGCGTTGAGGATCTGTTGGACTGGCAGGCCAGCGC GCGCGCCAAGGGGCCAGACGGCCTGCCGCGCCACGTGACGCGGATGTGGCCCAAGCGCGCCGAAGAGGTACTGAATGGCG GCTCGCTCTACTGGGTGTTCAAAGGCGTTATCCTGTGTCGTCAACCGATTGTGCGCTTTGATCCCGTGGACCGGGGAGAT GGGATTAACCGCTGCGGCATCGTGCTGAACCCCAACGTGACCCGCGTCGCCGCGACGCCCAAACGCGCTTTTCAGGGCTG GCGCTACCTGCAACCCGGCGATGCGCCGCGGGATCTGCGCGCGGGCTCCAAACAGCAAGAAGCGTTGCCACCGCAATTGG AAAGCGCCCTGGCAGAGATCGGCGTGCTTTGA
Upstream 100 bases:
>100_bases ACAGGAAATCCGCGCAATTTCGCCACGCCCTTCACCTGACGGGTTGCCGATGGGGCCTCAAGTGTTACTTTAGTCGCTAC ATCATCTTGGGGGATGACCC
Downstream 100 bases:
>100_bases GGACAAAGAGGCCGGACACCTTACGATGCCCGGCCCGATACTCATTACAAACTATTGAAAGCGTTTAGCTCAATGACGTT AGCCTAGCGGAAGGTGTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 143; Mature: 142
Protein sequence:
>143_residues MAATTHMLKLCVGATCVEDLLDWQASARAKGPDGLPRHVTRMWPKRAEEVLNGGSLYWVFKGVILCRQPIVRFDPVDRGD GINRCGIVLNPNVTRVAATPKRAFQGWRYLQPGDAPRDLRAGSKQQEALPPQLESALAEIGVL
Sequences:
>Translated_143_residues MAATTHMLKLCVGATCVEDLLDWQASARAKGPDGLPRHVTRMWPKRAEEVLNGGSLYWVFKGVILCRQPIVRFDPVDRGD GINRCGIVLNPNVTRVAATPKRAFQGWRYLQPGDAPRDLRAGSKQQEALPPQLESALAEIGVL >Mature_142_residues AATTHMLKLCVGATCVEDLLDWQASARAKGPDGLPRHVTRMWPKRAEEVLNGGSLYWVFKGVILCRQPIVRFDPVDRGDG INRCGIVLNPNVTRVAATPKRAFQGWRYLQPGDAPRDLRAGSKQQEALPPQLESALAEIGVL
Specific function: Unknown
COG id: COG5458
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15743; Mature: 15612
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAATTHMLKLCVGATCVEDLLDWQASARAKGPDGLPRHVTRMWPKRAEEVLNGGSLYWVF CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH KGVILCRQPIVRFDPVDRGDGINRCGIVLNPNVTRVAATPKRAFQGWRYLQPGDAPRDLR HHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCHHHHHCCCCCCCCCCCCHHHH AGSKQQEALPPQLESALAEIGVL CCCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure AATTHMLKLCVGATCVEDLLDWQASARAKGPDGLPRHVTRMWPKRAEEVLNGGSLYWVF CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH KGVILCRQPIVRFDPVDRGDGINRCGIVLNPNVTRVAATPKRAFQGWRYLQPGDAPRDLR HHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCHHHHHCCCCCCCCCCCCHHHH AGSKQQEALPPQLESALAEIGVL CCCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA