| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89053296
Identifier: 89053296
GI number: 89053296
Start: 766710
End: 767417
Strand: Reverse
Name: 89053296
Synonym: Jann_0805
Alternate gene names: NA
Gene position: 767417-766710 (Counterclockwise)
Preceding gene: 89053297
Following gene: 89053295
Centisome position: 17.77
GC content: 61.02
Gene sequence:
>708_bases ATGACGTTTAAGACACTTATCGGCGCCGTTGCGCTGGCCTTGGCGGCCGGGACTGTCAACGCAGCGACGATCACGTTCAA CACATTCAACATTGGCGAATTCAACACCGCGGTAAACGGTGGCACCGTTGAAGACTTCGAAGGCTTTGCTGGTGGCACGG GCTGGAATTCTTCCACAGTGACCAGCGTTGGCACCTTCGCGGCCAACACGGGAACGGGCTCCGGCTCGGTATGCAACACC CAGAGCGGCGGCAATTGCACCGACCTGTTCATCAATGACACAACCCTCAGCGGGCAGGGCAACCTTGTTCCGGCCGGTGC TGGAAACGCTCTGTCGTCCAATGACACCAACGGCATCTTCTGGGACGTGTTTCTCGCTGGCAACGCGATGTTCAACCGGA TCGTCTTTGCCGTGAACGATGCAGCAGACCTGAACAACACCATCTTTACCGTGCTGACCGACGACGGCTCGTCCGCCACG CTGTCCGGCCAGGCAAACGGCAATGAGCAGTTGGTAGTGATCGACCTCGGTGGGATGGTCTCCAGCGCGACTGTGTCGAT GTTCAACAACCGCACCAATGACGGGTTCACGATCGACGGTGCCGCTGCCACGGTCGCTCCCGTTCCGCTGCCCGCCGGTG CCGTGCTGCTTTTGGGTGGCCTTGGTGCTCTGGCCGTCATGCGCCGTCGCCGCGCCGCAGCCGCCTGA
Upstream 100 bases:
>100_bases CAGAGCCTTTCATCGGACGGACATGTCAGCTAAGCGGACATCAATATCGTAACGAGTGCGCGGGTTTCCGCCTGCGAACA GCTTAAAGAGGGGAAAAATT
Downstream 100 bases:
>100_bases GCGCAGGCCTGCCATTCAATTCGAAAGGGCGTCCTCTGGGGCGCCCTTTTTTTGTTCGGATTCGCGCGGCCGTCCTGCGA CCATCCGCGCGCGCGCGAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 235; Mature: 234
Protein sequence:
>235_residues MTFKTLIGAVALALAAGTVNAATITFNTFNIGEFNTAVNGGTVEDFEGFAGGTGWNSSTVTSVGTFAANTGTGSGSVCNT QSGGNCTDLFINDTTLSGQGNLVPAGAGNALSSNDTNGIFWDVFLAGNAMFNRIVFAVNDAADLNNTIFTVLTDDGSSAT LSGQANGNEQLVVIDLGGMVSSATVSMFNNRTNDGFTIDGAAATVAPVPLPAGAVLLLGGLGALAVMRRRRAAAA
Sequences:
>Translated_235_residues MTFKTLIGAVALALAAGTVNAATITFNTFNIGEFNTAVNGGTVEDFEGFAGGTGWNSSTVTSVGTFAANTGTGSGSVCNT QSGGNCTDLFINDTTLSGQGNLVPAGAGNALSSNDTNGIFWDVFLAGNAMFNRIVFAVNDAADLNNTIFTVLTDDGSSAT LSGQANGNEQLVVIDLGGMVSSATVSMFNNRTNDGFTIDGAAATVAPVPLPAGAVLLLGGLGALAVMRRRRAAAA >Mature_234_residues TFKTLIGAVALALAAGTVNAATITFNTFNIGEFNTAVNGGTVEDFEGFAGGTGWNSSTVTSVGTFAANTGTGSGSVCNTQ SGGNCTDLFINDTTLSGQGNLVPAGAGNALSSNDTNGIFWDVFLAGNAMFNRIVFAVNDAADLNNTIFTVLTDDGSSATL SGQANGNEQLVVIDLGGMVSSATVSMFNNRTNDGFTIDGAAATVAPVPLPAGAVLLLGGLGALAVMRRRRAAAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23492; Mature: 23361
Theoretical pI: Translated: 3.88; Mature: 3.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFKTLIGAVALALAAGTVNAATITFNTFNIGEFNTAVNGGTVEDFEGFAGGTGWNSSTV CCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCE TSVGTFAANTGTGSGSVCNTQSGGNCTDLFINDTTLSGQGNLVPAGAGNALSSNDTNGIF EEEEEEEECCCCCCCCEECCCCCCCEEEEEEECEEECCCCCEEECCCCCCCCCCCCCCEE WDVFLAGNAMFNRIVFAVNDAADLNNTIFTVLTDDGSSATLSGQANGNEQLVVIDLGGMV EEEEECCCHHHEEEEEEEECCCCCCCEEEEEEECCCCCEEEECCCCCCCEEEEEECCCCC SSATVSMFNNRTNDGFTIDGAAATVAPVPLPAGAVLLLGGLGALAVMRRRRAAAA CHHEEEECCCCCCCCEEECCCCEEEECCCCCCCHHEEHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TFKTLIGAVALALAAGTVNAATITFNTFNIGEFNTAVNGGTVEDFEGFAGGTGWNSSTV CHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCE TSVGTFAANTGTGSGSVCNTQSGGNCTDLFINDTTLSGQGNLVPAGAGNALSSNDTNGIF EEEEEEEECCCCCCCCEECCCCCCCEEEEEEECEEECCCCCEEECCCCCCCCCCCCCCEE WDVFLAGNAMFNRIVFAVNDAADLNNTIFTVLTDDGSSATLSGQANGNEQLVVIDLGGMV EEEEECCCHHHEEEEEEEECCCCCCCEEEEEEECCCCCEEEECCCCCCCEEEEEECCCCC SSATVSMFNNRTNDGFTIDGAAATVAPVPLPAGAVLLLGGLGALAVMRRRRAAAA CHHEEEECCCCCCCCEEECCCCEEEECCCCCCCHHEEHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA