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The map label for this gene is deoC [H]

Identifier: 89053280

GI number: 89053280

Start: 749928

End: 750953

Strand: Reverse

Name: deoC [H]

Synonym: Jann_0789

Alternate gene names: 89053280

Gene position: 750953-749928 (Counterclockwise)

Preceding gene: 89053282

Following gene: 89053279

Centisome position: 17.39

GC content: 64.62

Gene sequence:

>1026_bases
ATGGCCTCCAAACGCAAAAGTTCCCCCATGCACCAGACCACAACCGCGACGACCCTGCAAAAGGACCAGCTGCCCCAGGT
TCATCTTCCCCGGAATGAGGGGATGGATCTGGATATGGATCTGGTCGCACGGGTCCAGGCCAACACCTCCGCGATTGAAC
GGCGCGCGGCGACCCTGCCCGGACGGCGCGGCGTCAAGAAGGCCCATCAGGCCGCGTGGCTGGCCAAGGCCGTGACCTGC
ATCGACCTGACGACGCTGTCGGGCGACGACACGCCGGGCCGGGTGCGGCGGCTCTGTGCGAAGGCGCGCCAGCCGGTGCG
TGCGGACTTGCTGGACGCGCTTGGCCTGCCCGCGATCACCACCGGGGCCGTTTGCGTTTACCACGAAATGATCGAAGTGG
CCGTTGAGGCGCTGGACGGCACCGGCATCCCCGTCGCCGCCGTCTCCACCGGCTTTCCAGCGGGCCTGTCCCCGTTCGAG
TTGCGGGTGAAGGAGATTGAGATGTCGGTGGCCGCCGGGGCCAAGGAGATCGATATAGTTATCTCCCGTCGTCACGTCCT
GACCGGCAATTGGCAGGCCCTTTACGATGAAATGCGGGCCTTCCGCGCCGCCTGTCGCGAGGCCCACGTCAAGGCAATCC
TCGCCACCGGAGAGCTGGGGACATTGCGCAATGTCGCGCGCGCGTCGCTGATTTGCATGATGGCAGGCGCCGATTTCATC
AAGACCTCCACCGGCAAGGAAAGCGTGAACGCGACCCTGCCCGTATCGCTGGTGATGGTCCGCGCGATCCGCCAGTATGA
GGCGCTGACCGGCTTCAAGGTTGGCTACAAACCGGCGGGCGGGATTTCGAAGGCGAAGGATTCGCTGGTCTACCTGTCCC
TGATGAAAGAGGAACTGGGCCACCGCTGGCTGCAACCGGACCTGTTTAGGTTCGGAGCCAGCAGCCTTCTGGGCGACATC
GAACGGCAGTTGGAGCACCACGTCACAGGCCAGTATTCGGCGGGCTATCGCCATGGGATCGGGTGA

Upstream 100 bases:

>100_bases
CACGCCCCGGGGCACCAGAAAGCCGTTCGCGCCATTTTTGACCGTTTGGTCAACCTTGCCTTTTGTGCCATTTTCGTGGA
ACGCTGGGACGACACGAGTG

Downstream 100 bases:

>100_bases
GCAAAATGTTCCACACGTCCCAAATGATAGGAATGGCCTTCGCCACCGGGGCGGCAGTCGCGTTTTGTCTGTCGTTCTTG
ATGATGTCCGAAAGGGCCGC

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MASKRKSSPMHQTTTATTLQKDQLPQVHLPRNEGMDLDMDLVARVQANTSAIERRAATLPGRRGVKKAHQAAWLAKAVTC
IDLTTLSGDDTPGRVRRLCAKARQPVRADLLDALGLPAITTGAVCVYHEMIEVAVEALDGTGIPVAAVSTGFPAGLSPFE
LRVKEIEMSVAAGAKEIDIVISRRHVLTGNWQALYDEMRAFRAACREAHVKAILATGELGTLRNVARASLICMMAGADFI
KTSTGKESVNATLPVSLVMVRAIRQYEALTGFKVGYKPAGGISKAKDSLVYLSLMKEELGHRWLQPDLFRFGASSLLGDI
ERQLEHHVTGQYSAGYRHGIG

Sequences:

>Translated_341_residues
MASKRKSSPMHQTTTATTLQKDQLPQVHLPRNEGMDLDMDLVARVQANTSAIERRAATLPGRRGVKKAHQAAWLAKAVTC
IDLTTLSGDDTPGRVRRLCAKARQPVRADLLDALGLPAITTGAVCVYHEMIEVAVEALDGTGIPVAAVSTGFPAGLSPFE
LRVKEIEMSVAAGAKEIDIVISRRHVLTGNWQALYDEMRAFRAACREAHVKAILATGELGTLRNVARASLICMMAGADFI
KTSTGKESVNATLPVSLVMVRAIRQYEALTGFKVGYKPAGGISKAKDSLVYLSLMKEELGHRWLQPDLFRFGASSLLGDI
ERQLEHHVTGQYSAGYRHGIG
>Mature_340_residues
ASKRKSSPMHQTTTATTLQKDQLPQVHLPRNEGMDLDMDLVARVQANTSAIERRAATLPGRRGVKKAHQAAWLAKAVTCI
DLTTLSGDDTPGRVRRLCAKARQPVRADLLDALGLPAITTGAVCVYHEMIEVAVEALDGTGIPVAAVSTGFPAGLSPFEL
RVKEIEMSVAAGAKEIDIVISRRHVLTGNWQALYDEMRAFRAACREAHVKAILATGELGTLRNVARASLICMMAGADFIK
TSTGKESVNATLPVSLVMVRAIRQYEALTGFKVGYKPAGGISKAKDSLVYLSLMKEELGHRWLQPDLFRFGASSLLGDIE
RQLEHHVTGQYSAGYRHGIG

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=307, Percent_Identity=61.2377850162867, Blast_Score=379, Evalue=1e-105,
Organism=Escherichia coli, GI1790841, Length=241, Percent_Identity=37.7593360995851, Blast_Score=137, Evalue=9e-34,
Organism=Caenorhabditis elegans, GI17533015, Length=298, Percent_Identity=45.6375838926174, Blast_Score=235, Evalue=2e-62,
Organism=Drosophila melanogaster, GI19922098, Length=310, Percent_Identity=45.8064516129032, Blast_Score=267, Evalue=1e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 36909; Mature: 36778

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKRKSSPMHQTTTATTLQKDQLPQVHLPRNEGMDLDMDLVARVQANTSAIERRAATLP
CCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCC
GRRGVKKAHQAAWLAKAVTCIDLTTLSGDDTPGRVRRLCAKARQPVRADLLDALGLPAIT
CCCHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHH
TGAVCVYHEMIEVAVEALDGTGIPVAAVSTGFPAGLSPFELRVKEIEMSVAAGAKEIDIV
HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
ISRRHVLTGNWQALYDEMRAFRAACREAHVKAILATGELGTLRNVARASLICMMAGADFI
EECCEEECCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCHHH
KTSTGKESVNATLPVSLVMVRAIRQYEALTGFKVGYKPAGGISKAKDSLVYLSLMKEELG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
HRWLQPDLFRFGASSLLGDIERQLEHHVTGQYSAGYRHGIG
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASKRKSSPMHQTTTATTLQKDQLPQVHLPRNEGMDLDMDLVARVQANTSAIERRAATLP
CCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCC
GRRGVKKAHQAAWLAKAVTCIDLTTLSGDDTPGRVRRLCAKARQPVRADLLDALGLPAIT
CCCHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHH
TGAVCVYHEMIEVAVEALDGTGIPVAAVSTGFPAGLSPFELRVKEIEMSVAAGAKEIDIV
HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
ISRRHVLTGNWQALYDEMRAFRAACREAHVKAILATGELGTLRNVARASLICMMAGADFI
EECCEEECCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCHHH
KTSTGKESVNATLPVSLVMVRAIRQYEALTGFKVGYKPAGGISKAKDSLVYLSLMKEELG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
HRWLQPDLFRFGASSLLGDIERQLEHHVTGQYSAGYRHGIG
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA