| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is ydjX [C]
Identifier: 89053135
GI number: 89053135
Start: 614618
End: 615352
Strand: Direct
Name: ydjX [C]
Synonym: Jann_0644
Alternate gene names: 89053135
Gene position: 614618-615352 (Clockwise)
Preceding gene: 89053130
Following gene: 89053136
Centisome position: 14.23
GC content: 62.18
Gene sequence:
>735_bases ATGTCGGATAGCGTGAACCAGCCGTCGAACACCCAGATCACCCGTTACCTGCCGCTTCTTGCCGTCCTGATCGGCGCAGG TGTGGGGTGGTTCCTGTTTCGCGACTACCTCAGCTTTCAGGCCCTGGCCGACAATCGCGAGGCGCTGCTGGCGTTCCGCG ACGCGAACTACCTGCTGACGGTGGGGCTGTTCATCGGGGCCTATGCGTTGATCGTGGCCTTCTCTCTTCCGGGCGCGACC ATCGCGACGCTGACGGGTGGGTTCCTGTTCGCGACCTTCCCCGGCGCGTTCTTCAACGTCTTTGGCGCGACCCTTGGGGC CACGGCGATCTTTCTGGCGGCGCAGACCAGCTTTGGCGCACGGTTTGGCGCGACGCTGGAGGGGTCCGAAGGTGTGACAA AGAAGTTCAAGGACGCAATTGATGAGAACCAGTGGTCCGCCCTGTTCCTGCTGCGCCTTGTGCCCGCTGTGCCGTTTTTC GTCGCCAACCTGCTGCCCGCCTTCTTTGAAGTGCCCCTGCGCCGCTATGTGATTTCCACCTTCCTGGGCATTTTGCCGGG TGCGATTGTCTATACCTCCGTTGGTGCGGGTCTGGGAGAGGTGTTTGAGCGCGGCGAGACACCCAACCTTGGCATCATTT TCGAGCCGCAGATCCTCCTGCCGATCCTCGGCCTCTGTGCTCTGGCGACGTTGCCGATTATCCTCAAGGCCGTGCGCGGC AAGAAGGGCCTCTGA
Upstream 100 bases:
>100_bases CTTACCCACGTCACACCCTATCAAGCAACCGTGAGGAGGGATATCGCCGGTCGCCAAGGTGAAGCATCTAGGGTCTAACG TATATATAGGGACCCAAATC
Downstream 100 bases:
>100_bases TCCATGTCTACGATTGAAACTGATATCTGCGTCATCGGCGCGGGCTCTGGCGGTTTGTCCGTTGCGGCGGGTGCTGTCCA AATGGGCGCGAAGGTGGTCC
Product: hypothetical protein
Products: NA
Alternate protein names: Mercuric Reductase; SNARE Associated Golgi Protein-Related Protein; DedA Family Protein; SNARE Associated Golgi Protein-Like Protein; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Dihydrolipoamide Dehydrogenase; SNARE Associated Golgi Protein-Associated Protein; Pyridine Nucleotide-Disulphide Oxidoreductase; FAD-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase; Snare Associated Golgi Protein-Related Protein; SNARE-Associated Family Membrane Protein; Ribosomal Protein S; tRNA Uridine 5-Carboxymethylaminomethyl GidA
Number of amino acids: Translated: 244; Mature: 243
Protein sequence:
>244_residues MSDSVNQPSNTQITRYLPLLAVLIGAGVGWFLFRDYLSFQALADNREALLAFRDANYLLTVGLFIGAYALIVAFSLPGAT IATLTGGFLFATFPGAFFNVFGATLGATAIFLAAQTSFGARFGATLEGSEGVTKKFKDAIDENQWSALFLLRLVPAVPFF VANLLPAFFEVPLRRYVISTFLGILPGAIVYTSVGAGLGEVFERGETPNLGIIFEPQILLPILGLCALATLPIILKAVRG KKGL
Sequences:
>Translated_244_residues MSDSVNQPSNTQITRYLPLLAVLIGAGVGWFLFRDYLSFQALADNREALLAFRDANYLLTVGLFIGAYALIVAFSLPGAT IATLTGGFLFATFPGAFFNVFGATLGATAIFLAAQTSFGARFGATLEGSEGVTKKFKDAIDENQWSALFLLRLVPAVPFF VANLLPAFFEVPLRRYVISTFLGILPGAIVYTSVGAGLGEVFERGETPNLGIIFEPQILLPILGLCALATLPIILKAVRG KKGL >Mature_243_residues SDSVNQPSNTQITRYLPLLAVLIGAGVGWFLFRDYLSFQALADNREALLAFRDANYLLTVGLFIGAYALIVAFSLPGATI ATLTGGFLFATFPGAFFNVFGATLGATAIFLAAQTSFGARFGATLEGSEGVTKKFKDAIDENQWSALFLLRLVPAVPFFV ANLLPAFFEVPLRRYVISTFLGILPGAIVYTSVGAGLGEVFERGETPNLGIIFEPQILLPILGLCALATLPIILKAVRGK KGL
Specific function: Unknown
COG id: COG0398
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26079; Mature: 25948
Theoretical pI: Translated: 8.42; Mature: 8.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSVNQPSNTQITRYLPLLAVLIGAGVGWFLFRDYLSFQALADNREALLAFRDANYLLT CCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHEEEEECCCHHHH VGLFIGAYALIVAFSLPGATIATLTGGFLFATFPGAFFNVFGATLGATAIFLAAQTSFGA HHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC RFGATLEGSEGVTKKFKDAIDENQWSALFLLRLVPAVPFFVANLLPAFFEVPLRRYVIST CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLGILPGAIVYTSVGAGLGEVFERGETPNLGIIFEPQILLPILGLCALATLPIILKAVRG HHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHC KKGL CCCC >Mature Secondary Structure SDSVNQPSNTQITRYLPLLAVLIGAGVGWFLFRDYLSFQALADNREALLAFRDANYLLT CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHEEEEECCCHHHH VGLFIGAYALIVAFSLPGATIATLTGGFLFATFPGAFFNVFGATLGATAIFLAAQTSFGA HHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC RFGATLEGSEGVTKKFKDAIDENQWSALFLLRLVPAVPFFVANLLPAFFEVPLRRYVIST CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLGILPGAIVYTSVGAGLGEVFERGETPNLGIIFEPQILLPILGLCALATLPIILKAVRG HHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHC KKGL CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA