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The map label for this gene is rarA [H]

Identifier: 89053112

GI number: 89053112

Start: 594204

End: 595514

Strand: Direct

Name: rarA [H]

Synonym: Jann_0621

Alternate gene names: 89053112

Gene position: 594204-595514 (Clockwise)

Preceding gene: 89053111

Following gene: 89053114

Centisome position: 13.76

GC content: 63.77

Gene sequence:

>1311_bases
ATGGCTGATCTCTTTGACACCTCTGCGGCGCAGGCCGAGACCGCGCGGGGCCCGCGCCCTTTGGCGGACCGGCTGCGGCC
TGCCACGTTGGATGCGGTGATCGGGCAGGGGCACTTGCTTGGGTCCGAGGGCAGCCTGCGGGTGATGCTGGACAGTGGCG
CGCTGTCGTCGCTGATCTTCTGGGGGCCGCCCGGGGTTGGCAAGACCACGATCGCCCGCCTCTTGGCCGATGAAACGGCG
CTGAACTTCGTCCAGATCAGCGCGATTTTCACCGGCATGCCGGACCTGCGCAAAGTCTTTGAGGCCGCCAAAATCCGGCG
CACGAACGGGCAAGGGACGCTTCTGTTCGTCGACGAAATCCACCGGTTCAACAAAGCGCAACAGGACGGGTTTCTGCCCC
ATATGGAGGACGGCACGATCCTGCTGGTCGGCGCCACGACGGAAAACCCGTCGTTCGAGCTGAACGCTGCCGTCATGTCG
CGCAGTCAGGTGATGGTGCTGGAGCGCCTGTCGGACGATGATCTGGACGCGCTGTTGCAACGGGCCGAGGCGGAACTGGA
CCGCAAGTTGCCGCTTCTCCCCGACGCCCGCGTGGCGTTGCGAGAGATGGCGGACGGCGACGGGCGCGCGATGTTGAATT
TGGTGGAGCAGGTCGCCGCCTGGAAGGTGGCACCGCTGGATACACAGGCGCTGGGGCAGCGGTTGCAGCGGCGGGCGGCG
CAATACGACAAATCCGGCGATGCCCATTACAATCTGATCTCGGCGCTCCATAAATCGGTGCGCGGCTCGGACCCGGATGC
GGCATTGTATTGGTTCGCCCGGATGCTGGAAGGGGGCGAAGATCCCCGCTATCTGGCGCGGAGGATCACGCGGATGGCGG
TGGAGGATATCGGCCTTGCCGACCCGCAGGCGCAAAGGTTCTGCCTTGAGGCGTGGGAGATCTATGAGCGCCTCGGCTCC
CCGGAAGGAGAGTTGGCCCTGTCGCAAGCCGTCACCTACCTTGCCCTCGCGCCCAAATCGAATGCCTCCTACGTGGCCTA
CAAGGCGGCACGGGCCAGTGCGAAATCGACGGGCTCTGCCATGCCGCCCAAAAACATCCTGAACGCGCCCACGTCGATGA
TGAAGGATCAGGGCTACGGCAAGGGGTACGAGTATGACCACGACAGCGAGGATGGATTTTCCGGCGCGAATTATTTCCCC
GATACGATGTCCCGTCCCAAATTCTACGAGCCCAAGGAACGCGGGTTCGAGCGCGACCTGAGAAAGCGCGTGGAGTGGTT
TGAGAACCTGCGCAAAAAGCGGAAGGGGTGA

Upstream 100 bases:

>100_bases
AATTCCAAACCGCTAACCTTTGGTCAGGCCTGCGCACACCCTGTCTCGCGCCTTGGTAGGTCATTGTCGTCTCGCCGACG
TGGGCGTAACATCAGGCGCG

Downstream 100 bases:

>100_bases
GGGGCTGGTTTGTGGACATTGGGGCGCATATTTCAGCGCCCCAATGTCGGGTTAAGGCCGGTTCAGCACATGAAACGTCA
CGGGATCGACCCGCCGCGGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MADLFDTSAAQAETARGPRPLADRLRPATLDAVIGQGHLLGSEGSLRVMLDSGALSSLIFWGPPGVGKTTIARLLADETA
LNFVQISAIFTGMPDLRKVFEAAKIRRTNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAVMS
RSQVMVLERLSDDDLDALLQRAEAELDRKLPLLPDARVALREMADGDGRAMLNLVEQVAAWKVAPLDTQALGQRLQRRAA
QYDKSGDAHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPRYLARRITRMAVEDIGLADPQAQRFCLEAWEIYERLGS
PEGELALSQAVTYLALAPKSNASYVAYKAARASAKSTGSAMPPKNILNAPTSMMKDQGYGKGYEYDHDSEDGFSGANYFP
DTMSRPKFYEPKERGFERDLRKRVEWFENLRKKRKG

Sequences:

>Translated_436_residues
MADLFDTSAAQAETARGPRPLADRLRPATLDAVIGQGHLLGSEGSLRVMLDSGALSSLIFWGPPGVGKTTIARLLADETA
LNFVQISAIFTGMPDLRKVFEAAKIRRTNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAVMS
RSQVMVLERLSDDDLDALLQRAEAELDRKLPLLPDARVALREMADGDGRAMLNLVEQVAAWKVAPLDTQALGQRLQRRAA
QYDKSGDAHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPRYLARRITRMAVEDIGLADPQAQRFCLEAWEIYERLGS
PEGELALSQAVTYLALAPKSNASYVAYKAARASAKSTGSAMPPKNILNAPTSMMKDQGYGKGYEYDHDSEDGFSGANYFP
DTMSRPKFYEPKERGFERDLRKRVEWFENLRKKRKG
>Mature_435_residues
ADLFDTSAAQAETARGPRPLADRLRPATLDAVIGQGHLLGSEGSLRVMLDSGALSSLIFWGPPGVGKTTIARLLADETAL
NFVQISAIFTGMPDLRKVFEAAKIRRTNGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAVMSR
SQVMVLERLSDDDLDALLQRAEAELDRKLPLLPDARVALREMADGDGRAMLNLVEQVAAWKVAPLDTQALGQRLQRRAAQ
YDKSGDAHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPRYLARRITRMAVEDIGLADPQAQRFCLEAWEIYERLGSP
EGELALSQAVTYLALAPKSNASYVAYKAARASAKSTGSAMPPKNILNAPTSMMKDQGYGKGYEYDHDSEDGFSGANYFPD
TMSRPKFYEPKERGFERDLRKRVEWFENLRKKRKG

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=414, Percent_Identity=43.2367149758454, Blast_Score=317, Evalue=2e-86,
Organism=Homo sapiens, GI18426904, Length=414, Percent_Identity=38.6473429951691, Blast_Score=260, Evalue=2e-69,
Organism=Escherichia coli, GI1787119, Length=425, Percent_Identity=45.4117647058823, Blast_Score=375, Evalue=1e-105,
Organism=Escherichia coli, GI1788167, Length=126, Percent_Identity=31.7460317460317, Blast_Score=63, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=419, Percent_Identity=40.3341288782816, Blast_Score=290, Evalue=4e-79,
Organism=Saccharomyces cerevisiae, GI6324039, Length=209, Percent_Identity=27.7511961722488, Blast_Score=71, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48245; Mature: 48114

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLFDTSAAQAETARGPRPLADRLRPATLDAVIGQGHLLGSEGSLRVMLDSGALSSLIF
CCCCCCCCHHHHHHCCCCCCHHHHCCCHHHHHHHCCCEEECCCCCEEEEEECCCHHHEEE
WGPPGVGKTTIARLLADETALNFVQISAIFTGMPDLRKVFEAAKIRRTNGQGTLLFVDEI
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEHHHH
HRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAVMSRSQVMVLERLSDDDLDALLQ
HHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCEEHHHHHCCHHHHHHHHCCCCCHHHHHH
RAEAELDRKLPLLPDARVALREMADGDGRAMLNLVEQVAAWKVAPLDTQALGQRLQRRAA
HHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
QYDKSGDAHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPRYLARRITRMAVEDIGLA
HCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
DPQAQRFCLEAWEIYERLGSPEGELALSQAVTYLALAPKSNASYVAYKAARASAKSTGSA
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCCEEEHHHHHHHHHCCCCC
MPPKNILNAPTSMMKDQGYGKGYEYDHDSEDGFSGANYFPDTMSRPKFYEPKERGFERDL
CCCHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RKRVEWFENLRKKRKG
HHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ADLFDTSAAQAETARGPRPLADRLRPATLDAVIGQGHLLGSEGSLRVMLDSGALSSLIF
CCCCCCCHHHHHHCCCCCCHHHHCCCHHHHHHHCCCEEECCCCCEEEEEECCCHHHEEE
WGPPGVGKTTIARLLADETALNFVQISAIFTGMPDLRKVFEAAKIRRTNGQGTLLFVDEI
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEHHHH
HRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAVMSRSQVMVLERLSDDDLDALLQ
HHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCEEHHHHHCCHHHHHHHHCCCCCHHHHHH
RAEAELDRKLPLLPDARVALREMADGDGRAMLNLVEQVAAWKVAPLDTQALGQRLQRRAA
HHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
QYDKSGDAHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPRYLARRITRMAVEDIGLA
HCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
DPQAQRFCLEAWEIYERLGSPEGELALSQAVTYLALAPKSNASYVAYKAARASAKSTGSA
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCCEEEHHHHHHHHHCCCCC
MPPKNILNAPTSMMKDQGYGKGYEYDHDSEDGFSGANYFPDTMSRPKFYEPKERGFERDL
CCCHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RKRVEWFENLRKKRKG
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]