BacMap

Definition	Jannaschia sp. CCS1 chromosome, complete genome.
Accession	NC_007802
Length	4,317,977

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The map label for this gene is yngJ [H]

Identifier: 89053021

GI number: 89053021

Start: 519783

End: 521465

Strand: Reverse

Name: yngJ [H]

Synonym: Jann_0530

Alternate gene names: 89053021

Gene position: 521465-519783 (Counterclockwise)

Preceding gene: 89053023

Following gene: 89053020

Centisome position: 12.08

GC content: 61.56

Gene sequence:

>1683_bases
ATGCCCCGCGACGCCCAACAGCAACCCGAGACCGCCGTGATTCTCTCTGATCTTCTTGCCCTGACCAGTTCCGCCGTCGC
CCCCGCCGAGGCGCTTCTGAACAAGGCCAAATCCCACCTGCGCTATGTGCTGTCCGAGGGTGGCCGGATTTCTGCCCCGC
TGATCGAGCGAAACCAGACCGCCGCTCACGGCCTTGCCTGGCTGGCAACATATGTCGAATCCCTGCGGCAGATGCAGGGA
TGGGCCGAGCGTCTGGATGCTGACGGCAAGTTTGGCGAGATCGAGCAACTGATCCTGCAAATCACCTTCGGCGAATACCT
TTGGCAGATCTACGGCGGCATTCCGATGAGCCAGGGCGAAATCCTGCGCCTTCAGGACATCGGGTTGAGCCAGGACGATC
AACGCGCGCTGATGGACGACGCGGTGATGACCCTTACGGCCAGCGGCAACACGCAAGCCGCCCGCACGCGCCTGGTCGAG
TTGATGCAGGACCGCGCCGCCGAAGTCACCGTAGGCGCCTGTGGTCTGGATGAAGAACTCGACATGATCCGCGAGCAATT
CCGCCGCTACGCCGTCGACCGCGTCATTCCCAACGCCCACGACTGGCACCTGAACGATGAGCTGATCCCGATGGACATCA
TCGAAGACCTGTCCGAGATGGGCGTCTTCGGCCTGACGATCCCGGAAGAGCATGGTGGTCTGGGCATGTCCAAAGCGTCC
ATGTGCGTCGTCTCCGAGGAGCTGTCGCGCGGCTACATCGGCGTGGGGTCCCTCGCGACTCGGTCAGAGATCGCGGCCGA
GTTGATTCTGGCCGGCGGCACGGACGACCAGAAGGCCAAGTGGCTGCCGGGTCTGTCGTCCGGAGAGATCCTGCCCACCG
CCGTCTTCACTGAACCCAACACCGGATCAGACCTCGGCTCCCTGCGCACGAAAGCCACCAAAGACGGCGATGATTGGGTC
ATCAATGGCAATAAAACCTGGATCACCCATGCCGCGCGAACCCATGTGATGACCGTGCTGGCACGAACCATCCCCGACAC
GAACGATTACAAGGGCCTGTCGATGTTTCTGGCCGAAAAGACCCCCGGCACCGACGAGGCACCCTGGCAGGACGCTGGCA
TCTCGGGCGGTGAGATCGAGGTTCTGGGTTACCGCGGCATGAAGGAATACACCGTCAACTTTGACGATTTCAAAGTGAAG
GGTGAAAACCTTTTGGGCGGTCAGGAAGGCCAGGGCTTCAAGCAGCTCATGCAAACGTTTGAGAGCGCGCGCATCCAAAC
CGCCGCCCGCGCCATCGGTGTCGCCCAATCCGCCCTTGATGCCGGGATGCAGTATGCGCAGGACCGCAAGCAATTCGGCA
AAGGCCTGATCAACTTCCCCCGCGTCTCCGGCAAGCTGGCGATGATGGCCGTGGAGATCATGGTCGCCCGGCAACTGACG
TATTTCTCGGCACGCGAGAAGGACAATGACCGCCGCTGTGACCTGGAAGCTGGCATGGCGAAACTTCTGGGGGCTCGTGT
CGCCTGGGCTGCTGCCGATAACGCCCTGCAAATCCACGGCGGCAACGGCTTCGCACTGGAATATGGTATTAGCCGCATCC
TATGCGATGCGCGGATCCTGAACATCTTTGAGGGCGCCGCTGAAATTCAGGCGCAGGTCATCGCCCGGCGATTGTTGGCA
TAG

Upstream 100 bases:

>100_bases
CACCACGTCGCATTGCAGCATTTTTGTTGCGCTGCACCTGCAAACGCCCTACCTCTCCCCCAGTCCGAAATGAGCGACCC
GAGTTCAGGAGAATGCTACC

Downstream 100 bases:

>100_bases
GCCCGTTACCAATCGATTTCTGACATTCTGACAATTTGACTTGAATTTGTCAGAAGAAGCTTACCTATGGGGTGTCTGAT
AGCGGAGCCTCCCCATGCCA

Product: Acyl-CoA dehydrogenase

Products: gamma-butyrobetaine; Acceptor; gamma-butyrobetainyl-CoA [C]

Alternate protein names: NA

Number of amino acids: Translated: 560; Mature: 559

Protein sequence:

>560_residues
MPRDAQQQPETAVILSDLLALTSSAVAPAEALLNKAKSHLRYVLSEGGRISAPLIERNQTAAHGLAWLATYVESLRQMQG
WAERLDADGKFGEIEQLILQITFGEYLWQIYGGIPMSQGEILRLQDIGLSQDDQRALMDDAVMTLTASGNTQAARTRLVE
LMQDRAAEVTVGACGLDEELDMIREQFRRYAVDRVIPNAHDWHLNDELIPMDIIEDLSEMGVFGLTIPEEHGGLGMSKAS
MCVVSEELSRGYIGVGSLATRSEIAAELILAGGTDDQKAKWLPGLSSGEILPTAVFTEPNTGSDLGSLRTKATKDGDDWV
INGNKTWITHAARTHVMTVLARTIPDTNDYKGLSMFLAEKTPGTDEAPWQDAGISGGEIEVLGYRGMKEYTVNFDDFKVK
GENLLGGQEGQGFKQLMQTFESARIQTAARAIGVAQSALDAGMQYAQDRKQFGKGLINFPRVSGKLAMMAVEIMVARQLT
YFSAREKDNDRRCDLEAGMAKLLGARVAWAAADNALQIHGGNGFALEYGISRILCDARILNIFEGAAEIQAQVIARRLLA

Sequences:

>Translated_560_residues
MPRDAQQQPETAVILSDLLALTSSAVAPAEALLNKAKSHLRYVLSEGGRISAPLIERNQTAAHGLAWLATYVESLRQMQG
WAERLDADGKFGEIEQLILQITFGEYLWQIYGGIPMSQGEILRLQDIGLSQDDQRALMDDAVMTLTASGNTQAARTRLVE
LMQDRAAEVTVGACGLDEELDMIREQFRRYAVDRVIPNAHDWHLNDELIPMDIIEDLSEMGVFGLTIPEEHGGLGMSKAS
MCVVSEELSRGYIGVGSLATRSEIAAELILAGGTDDQKAKWLPGLSSGEILPTAVFTEPNTGSDLGSLRTKATKDGDDWV
INGNKTWITHAARTHVMTVLARTIPDTNDYKGLSMFLAEKTPGTDEAPWQDAGISGGEIEVLGYRGMKEYTVNFDDFKVK
GENLLGGQEGQGFKQLMQTFESARIQTAARAIGVAQSALDAGMQYAQDRKQFGKGLINFPRVSGKLAMMAVEIMVARQLT
YFSAREKDNDRRCDLEAGMAKLLGARVAWAAADNALQIHGGNGFALEYGISRILCDARILNIFEGAAEIQAQVIARRLLA
>Mature_559_residues
PRDAQQQPETAVILSDLLALTSSAVAPAEALLNKAKSHLRYVLSEGGRISAPLIERNQTAAHGLAWLATYVESLRQMQGW
AERLDADGKFGEIEQLILQITFGEYLWQIYGGIPMSQGEILRLQDIGLSQDDQRALMDDAVMTLTASGNTQAARTRLVEL
MQDRAAEVTVGACGLDEELDMIREQFRRYAVDRVIPNAHDWHLNDELIPMDIIEDLSEMGVFGLTIPEEHGGLGMSKASM
CVVSEELSRGYIGVGSLATRSEIAAELILAGGTDDQKAKWLPGLSSGEILPTAVFTEPNTGSDLGSLRTKATKDGDDWVI
NGNKTWITHAARTHVMTVLARTIPDTNDYKGLSMFLAEKTPGTDEAPWQDAGISGGEIEVLGYRGMKEYTVNFDDFKVKG
ENLLGGQEGQGFKQLMQTFESARIQTAARAIGVAQSALDAGMQYAQDRKQFGKGLINFPRVSGKLAMMAVEIMVARQLTY
FSAREKDNDRRCDLEAGMAKLLGARVAWAAADNALQIHGGNGFALEYGISRILCDARILNIFEGAAEIQAQVIARRLLA

Specific function: Catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI187960098, Length=373, Percent_Identity=36.4611260053619, Blast_Score=218, Evalue=8e-57,
Organism=Homo sapiens, GI4557231, Length=373, Percent_Identity=36.4611260053619, Blast_Score=218, Evalue=1e-56,
Organism=Homo sapiens, GI4557233, Length=386, Percent_Identity=35.2331606217617, Blast_Score=209, Evalue=6e-54,
Organism=Homo sapiens, GI21361497, Length=358, Percent_Identity=37.1508379888268, Blast_Score=207, Evalue=2e-53,
Organism=Homo sapiens, GI4501859, Length=384, Percent_Identity=31.7708333333333, Blast_Score=186, Evalue=3e-47,
Organism=Homo sapiens, GI226958412, Length=389, Percent_Identity=30.5912596401028, Blast_Score=186, Evalue=5e-47,
Organism=Homo sapiens, GI76496475, Length=370, Percent_Identity=33.5135135135135, Blast_Score=181, Evalue=2e-45,
Organism=Homo sapiens, GI4557235, Length=370, Percent_Identity=33.5135135135135, Blast_Score=181, Evalue=2e-45,
Organism=Homo sapiens, GI226958414, Length=348, Percent_Identity=31.8965517241379, Blast_Score=177, Evalue=3e-44,
Organism=Homo sapiens, GI4501857, Length=385, Percent_Identity=28.051948051948, Blast_Score=172, Evalue=6e-43,
Organism=Homo sapiens, GI7656849, Length=387, Percent_Identity=29.7157622739018, Blast_Score=170, Evalue=4e-42,
Organism=Homo sapiens, GI4503943, Length=388, Percent_Identity=30.1546391752577, Blast_Score=139, Evalue=8e-33,
Organism=Homo sapiens, GI7669494, Length=376, Percent_Identity=30.0531914893617, Blast_Score=130, Evalue=4e-30,
Organism=Homo sapiens, GI38505218, Length=359, Percent_Identity=26.1838440111421, Blast_Score=100, Evalue=6e-21,
Organism=Homo sapiens, GI211971008, Length=368, Percent_Identity=26.0869565217391, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI48976061, Length=368, Percent_Identity=26.0869565217391, Blast_Score=98, Evalue=2e-20,
Organism=Escherichia coli, GI1786223, Length=362, Percent_Identity=30.1104972375691, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI87081958, Length=351, Percent_Identity=29.0598290598291, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI87081702, Length=284, Percent_Identity=25.3521126760563, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17570075, Length=394, Percent_Identity=36.2944162436548, Blast_Score=230, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI17569725, Length=387, Percent_Identity=35.1421188630491, Blast_Score=222, Evalue=4e-58,
Organism=Caenorhabditis elegans, GI17534899, Length=380, Percent_Identity=35, Blast_Score=216, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI17508101, Length=383, Percent_Identity=33.420365535248, Blast_Score=197, Evalue=8e-51,
Organism=Caenorhabditis elegans, GI71985184, Length=374, Percent_Identity=33.4224598930481, Blast_Score=196, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI17538396, Length=392, Percent_Identity=31.3775510204082, Blast_Score=190, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI17506239, Length=370, Percent_Identity=32.4324324324324, Blast_Score=189, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI17533517, Length=390, Percent_Identity=31.5384615384615, Blast_Score=177, Evalue=9e-45,
Organism=Caenorhabditis elegans, GI71990804, Length=301, Percent_Identity=33.8870431893688, Blast_Score=155, Evalue=6e-38,
Organism=Caenorhabditis elegans, GI17505929, Length=385, Percent_Identity=27.2727272727273, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI71985192, Length=354, Percent_Identity=29.9435028248588, Blast_Score=147, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17551932, Length=392, Percent_Identity=27.0408163265306, Blast_Score=145, Evalue=4e-35,
Organism=Caenorhabditis elegans, GI17534353, Length=375, Percent_Identity=29.6, Blast_Score=136, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI32563615, Length=237, Percent_Identity=33.7552742616034, Blast_Score=134, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI71982178, Length=326, Percent_Identity=26.0736196319018, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17531909, Length=249, Percent_Identity=25.3012048192771, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24660351, Length=386, Percent_Identity=34.9740932642487, Blast_Score=212, Evalue=6e-55,
Organism=Drosophila melanogaster, GI21356377, Length=386, Percent_Identity=34.7150259067358, Blast_Score=202, Evalue=5e-52,
Organism=Drosophila melanogaster, GI21355753, Length=390, Percent_Identity=32.5641025641026, Blast_Score=183, Evalue=3e-46,
Organism=Drosophila melanogaster, GI24646207, Length=390, Percent_Identity=32.3076923076923, Blast_Score=182, Evalue=5e-46,
Organism=Drosophila melanogaster, GI281363737, Length=374, Percent_Identity=31.283422459893, Blast_Score=179, Evalue=4e-45,
Organism=Drosophila melanogaster, GI24666513, Length=383, Percent_Identity=31.8537859007833, Blast_Score=179, Evalue=7e-45,
Organism=Drosophila melanogaster, GI19920834, Length=390, Percent_Identity=28.4615384615385, Blast_Score=122, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.- [C]

Molecular weight: Translated: 61100; Mature: 60969

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRDAQQQPETAVILSDLLALTSSAVAPAEALLNKAKSHLRYVLSEGGRISAPLIERNQT
CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCHHCCCCH
AAHGLAWLATYVESLRQMQGWAERLDADGKFGEIEQLILQITFGEYLWQIYGGIPMSQGE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ILRLQDIGLSQDDQRALMDDAVMTLTASGNTQAARTRLVELMQDRAAEVTVGACGLDEEL
EEEEECCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHH
DMIREQFRRYAVDRVIPNAHDWHLNDELIPMDIIEDLSEMGVFGLTIPEEHGGLGMSKAS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCHHH
MCVVSEELSRGYIGVGSLATRSEIAAELILAGGTDDQKAKWLPGLSSGEILPTAVFTEPN
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHCCCCCCCCCEEEEEEEECCC
TGSDLGSLRTKATKDGDDWVINGNKTWITHAARTHVMTVLARTIPDTNDYKGLSMFLAEK
CCCCHHHHHHCCCCCCCCEEECCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
TPGTDEAPWQDAGISGGEIEVLGYRGMKEYTVNFDDFKVKGENLLGGQEGQGFKQLMQTF
CCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHH
ESARIQTAARAIGVAQSALDAGMQYAQDRKQFGKGLINFPRVSGKLAMMAVEIMVARQLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
YFSAREKDNDRRCDLEAGMAKLLGARVAWAAADNALQIHGGNGFALEYGISRILCDARIL
HHHHCCCCCCCCCCHHHHHHHHHHHHHHEEECCCEEEEECCCCEEHHHHHHHHHHHHHHH
NIFEGAAEIQAQVIARRLLA
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PRDAQQQPETAVILSDLLALTSSAVAPAEALLNKAKSHLRYVLSEGGRISAPLIERNQT
CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCHHCCCCH
AAHGLAWLATYVESLRQMQGWAERLDADGKFGEIEQLILQITFGEYLWQIYGGIPMSQGE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ILRLQDIGLSQDDQRALMDDAVMTLTASGNTQAARTRLVELMQDRAAEVTVGACGLDEEL
EEEEECCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHH
DMIREQFRRYAVDRVIPNAHDWHLNDELIPMDIIEDLSEMGVFGLTIPEEHGGLGMSKAS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCHHH
MCVVSEELSRGYIGVGSLATRSEIAAELILAGGTDDQKAKWLPGLSSGEILPTAVFTEPN
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHCCCCCCCCCEEEEEEEECCC
TGSDLGSLRTKATKDGDDWVINGNKTWITHAARTHVMTVLARTIPDTNDYKGLSMFLAEK
CCCCHHHHHHCCCCCCCCEEECCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
TPGTDEAPWQDAGISGGEIEVLGYRGMKEYTVNFDDFKVKGENLLGGQEGQGFKQLMQTF
CCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHH
ESARIQTAARAIGVAQSALDAGMQYAQDRKQFGKGLINFPRVSGKLAMMAVEIMVARQLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
YFSAREKDNDRRCDLEAGMAKLLGARVAWAAADNALQIHGGNGFALEYGISRILCDARIL
HHHHCCCCCCCCCCHHHHHHHHHHHHHHEEECCCEEEEECCCCEEHHHHHHHHHHHHHHH
NIFEGAAEIQAQVIARRLLA
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: crotono-betaine; reduced acceptor; crotonobetainyl-CoA [C]

Specific reaction: reduced acceptor + crotono-betaine = Acceptor + gamma-butyrobetaine reduced acceptor + crotonobetainyl-CoA = Acceptor + gamma-butyrobetainyl-CoA [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]