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The map label for this gene is recO

Identifier: 89053018

GI number: 89053018

Start: 517438

End: 518172

Strand: Direct

Name: recO

Synonym: Jann_0527

Alternate gene names: 89053018

Gene position: 517438-518172 (Clockwise)

Preceding gene: 89053016

Following gene: 89053022

Centisome position: 11.98

GC content: 67.35

Gene sequence:

>735_bases
ATGGACTGGCGCGCAGATGGGATCCTTTTGGCCGTGCGGCGGCATGGCGAGGCCTCGGCCATTATCGAGCTGTTCACAGC
CGATCAGGGCTGCCATTTGGGCGTCGTGCGGGGTGGGGCATCGCGCAAAATGGCTCCGCTGTTGCAGGTTGGTGCGCAGC
TTGATGCGACGTGGCGGGCGCGGTTGTCGGATCACATCGGCAGCTACACCGTTGAATTGGTTAAGGGCCGCGCCGCAGAG
GTGATGGAGGACCGGGTGGCTTTGGCGGGCCTGTCATCGGTCTGCGCCTTGCTGTCGTTCAGCCTGCCCGAGCGTGCCGC
TTACCCCGGCCTTTTTGCGCGGACCCTCGCGGTTCTTGACGGTCTGGGGGCGGAGCGGTGGGCAGAGGCCTATCTGGGGT
GGGAGATGGCCCTGTTGACCGAGATGGGGTTTGGGTTGGACCTCAGCCAATGCGCGGCCACGGGGGTCACGCAGGATCTG
GCGTTCATCTCGCCGCGCACGGGCCGCGCCGTGTCACGGGCGGCGGCGGGGGAGTGGGCGGATCGGTTGTTGCCGCTGTC
GCCCGCGTTGGAGGGGATGGCGCGTGGGCCAGAGGACATCCTGGCCGGGCTGGCTGTGACGGGTCATTTCCTTGCGACGC
ATCTCGCCCCAAGCCTCGGCGACAAGCCGTTGCCCGCAGCGCGGCAGCGATTGATCGACGCGTTGGAGCGGCAGGTTATC
CGAGGGGGTAGCTAG

Upstream 100 bases:

>100_bases
GGAACATGCTCTGCTCATTGCCACGGCTGTGTGCGCATTTCTAGCGCGGCCTCTGCGTTTTTCCCGTGCGCTGTGGGTTA
CAAGTCGCGATACATGTCCC

Downstream 100 bases:

>100_bases
CCAGAACCTCATGTCGCGCGCCCGATGGCGTCAGGGTGGATTCGTAGAGGTTTGCGGTACGGGCGGTGAAGCCTGGCACC
TTGATCGGCGTGCCGATGGC

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MDWRADGILLAVRRHGEASAIIELFTADQGCHLGVVRGGASRKMAPLLQVGAQLDATWRARLSDHIGSYTVELVKGRAAE
VMEDRVALAGLSSVCALLSFSLPERAAYPGLFARTLAVLDGLGAERWAEAYLGWEMALLTEMGFGLDLSQCAATGVTQDL
AFISPRTGRAVSRAAAGEWADRLLPLSPALEGMARGPEDILAGLAVTGHFLATHLAPSLGDKPLPAARQRLIDALERQVI
RGGS

Sequences:

>Translated_244_residues
MDWRADGILLAVRRHGEASAIIELFTADQGCHLGVVRGGASRKMAPLLQVGAQLDATWRARLSDHIGSYTVELVKGRAAE
VMEDRVALAGLSSVCALLSFSLPERAAYPGLFARTLAVLDGLGAERWAEAYLGWEMALLTEMGFGLDLSQCAATGVTQDL
AFISPRTGRAVSRAAAGEWADRLLPLSPALEGMARGPEDILAGLAVTGHFLATHLAPSLGDKPLPAARQRLIDALERQVI
RGGS
>Mature_244_residues
MDWRADGILLAVRRHGEASAIIELFTADQGCHLGVVRGGASRKMAPLLQVGAQLDATWRARLSDHIGSYTVELVKGRAAE
VMEDRVALAGLSSVCALLSFSLPERAAYPGLFARTLAVLDGLGAERWAEAYLGWEMALLTEMGFGLDLSQCAATGVTQDL
AFISPRTGRAVSRAAAGEWADRLLPLSPALEGMARGPEDILAGLAVTGHFLATHLAPSLGDKPLPAARQRLIDALERQVI
RGGS

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_JANSC (Q28V18)

Other databases:

- EMBL:   CP000264
- RefSeq:   YP_508469.1
- ProteinModelPortal:   Q28V18
- STRING:   Q28V18
- GeneID:   3932968
- GenomeReviews:   CP000264_GR
- KEGG:   jan:Jann_0527
- eggNOG:   COG1381
- HOGENOM:   HBG474229
- OMA:   PERDPHP
- ProtClustDB:   PRK00085
- BioCyc:   JSP290400:JANN_0527-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 25864; Mature: 25864

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWRADGILLAVRRHGEASAIIELFTADQGCHLGVVRGGASRKMAPLLQVGAQLDATWRA
CCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCHHHHH
RLSDHIGSYTVELVKGRAAEVMEDRVALAGLSSVCALLSFSLPERAAYPGLFARTLAVLD
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
GLGAERWAEAYLGWEMALLTEMGFGLDLSQCAATGVTQDLAFISPRTGRAVSRAAAGEWA
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHH
DRLLPLSPALEGMARGPEDILAGLAVTGHFLATHLAPSLGDKPLPAARQRLIDALERQVI
HHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
RGGS
CCCC
>Mature Secondary Structure
MDWRADGILLAVRRHGEASAIIELFTADQGCHLGVVRGGASRKMAPLLQVGAQLDATWRA
CCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCHHHHH
RLSDHIGSYTVELVKGRAAEVMEDRVALAGLSSVCALLSFSLPERAAYPGLFARTLAVLD
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
GLGAERWAEAYLGWEMALLTEMGFGLDLSQCAATGVTQDLAFISPRTGRAVSRAAAGEWA
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHH
DRLLPLSPALEGMARGPEDILAGLAVTGHFLATHLAPSLGDKPLPAARQRLIDALERQVI
HHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
RGGS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA