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The map label for this gene is rpoZ

Identifier: 89053004

GI number: 89053004

Start: 507105

End: 507458

Strand: Direct

Name: rpoZ

Synonym: Jann_0513

Alternate gene names: 89053004

Gene position: 507105-507458 (Clockwise)

Preceding gene: 89053003

Following gene: 89053005

Centisome position: 11.74

GC content: 60.73

Gene sequence:

>354_bases
ATGGCCCGCGTCACGGTTGAAGATTGCGTTGATAAGGTCCCGAACCGGTTTGAGTTGGTGATGCTTGCGTCCCACCGCGC
CCGTGAGATTGCCGCAGGCGATCCGCTGACGATCGACCGCGACAATGACAAGAACCCCGTCGTCTCTTTGCGTGAAATCG
CCGATGAGACCCAGTCGGCAGACGATCTGCGCGAACGCCTGATCGAAAGCCACCAGACGCAGATCGAAGTCGACGAGCCC
GAGGAAGACGCCATGGCGCTTCTGCAAGGCGTGGAGCAGGATCGCCCTGCCCAGGACGACATGAGCGAAGAGCAGATGCT
GCGCGCGCTGATGGAAGCGCAGGGTCAGAAGTAA

Upstream 100 bases:

>100_bases
TGAAACTGCTGCAATGGCCGCGAATCCCATTGTCAATACGCCCATCGGCGCATATGTAGCGCCTTTAACCCCTTAAGGTT
TCTAGAGTCTGGAGTGCCCC

Downstream 100 bases:

>100_bases
AGCGTGGCGGCGGATGGCAGGCCAGCAGACGAGACGGTCGCAGAGGATGCGATTACCGTCGACGATCTGCTAAGCCTCGT
CCGCAACTACAACCCCAAAG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MARVTVEDCVDKVPNRFELVMLASHRAREIAAGDPLTIDRDNDKNPVVSLREIADETQSADDLRERLIESHQTQIEVDEP
EEDAMALLQGVEQDRPAQDDMSEEQMLRALMEAQGQK

Sequences:

>Translated_117_residues
MARVTVEDCVDKVPNRFELVMLASHRAREIAAGDPLTIDRDNDKNPVVSLREIADETQSADDLRERLIESHQTQIEVDEP
EEDAMALLQGVEQDRPAQDDMSEEQMLRALMEAQGQK
>Mature_116_residues
ARVTVEDCVDKVPNRFELVMLASHRAREIAAGDPLTIDRDNDKNPVVSLREIADETQSADDLRERLIESHQTQIEVDEPE
EDAMALLQGVEQDRPAQDDMSEEQMLRALMEAQGQK

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=55, Percent_Identity=54.5454545454545, Blast_Score=59, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_JANSC (Q28V32)

Other databases:

- EMBL:   CP000264
- RefSeq:   YP_508455.1
- STRING:   Q28V32
- GeneID:   3932954
- GenomeReviews:   CP000264_GR
- KEGG:   jan:Jann_0513
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   PEEDSMA
- ProtClustDB:   PRK00392
- BioCyc:   JSP290400:JANN_0513-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 13259; Mature: 13128

Theoretical pI: Translated: 4.05; Mature: 4.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCVDKVPNRFELVMLASHRAREIAAGDPLTIDRDNDKNPVVSLREIADETQSA
CCCCCHHHHHHHCCCCEEEHHHCCHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCH
DDLRERLIESHQTQIEVDEPEEDAMALLQGVEQDRPAQDDMSEEQMLRALMEAQGQK
HHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ARVTVEDCVDKVPNRFELVMLASHRAREIAAGDPLTIDRDNDKNPVVSLREIADETQSA
CCCCHHHHHHHCCCCEEEHHHCCHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCH
DDLRERLIESHQTQIEVDEPEEDAMALLQGVEQDRPAQDDMSEEQMLRALMEAQGQK
HHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA