Click here to switch to the map view.

The map label for this gene is rpmI

Identifier: 89052941

GI number: 89052941

Start: 452987

End: 453187

Strand: Direct

Name: rpmI

Synonym: Jann_0450

Alternate gene names: 89052941

Gene position: 452987-453187 (Clockwise)

Preceding gene: 89052939

Following gene: 89052942

Centisome position: 10.49

GC content: 56.22

Gene sequence:

>201_bases
ATGCCGAAGATGAAGACAAAGTCGAGCGCGAAGAAGCGCTTCAAAGTGACAAGCACCGGTAAGGTGATGGCCGCTCAGGC
GGGCAAGCAGCACGGGATGATCAAGCGGAGCAACAAGTTCCTTCGCAATGCACGTGGGACGAGCGAACTCAGCGCCCCCG
ATAGCAAGATCGTCAAGTCCTACATGCCCTACGACCGTTAA

Upstream 100 bases:

>100_bases
CGGGACGATTGGCTTTAAGCGGCACCTCTCGAACGATGAGTCCGGCCGAAAACGGCATGCCGCGACGCATCTGAACCGCT
CAGGACGATAGGAGTTGGAA

Downstream 100 bases:

>100_bases
GGAGCCGCTGATATGTCCCGTACCAAAGGTGGAACCGTCACTCACCGTCGCCACAAGAAAGTCATCGATGCCGCCAAAGG
TTACTATGGCGCGCGTTCGA

Product: 50S ribosomal protein L35

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 65

Protein sequence:

>66_residues
MPKMKTKSSAKKRFKVTSTGKVMAAQAGKQHGMIKRSNKFLRNARGTSELSAPDSKIVKSYMPYDR

Sequences:

>Translated_66_residues
MPKMKTKSSAKKRFKVTSTGKVMAAQAGKQHGMIKRSNKFLRNARGTSELSAPDSKIVKSYMPYDR
>Mature_65_residues
PKMKTKSSAKKRFKVTSTGKVMAAQAGKQHGMIKRSNKFLRNARGTSELSAPDSKIVKSYMPYDR

Specific function: Unknown

COG id: COG0291

COG function: function code J; Ribosomal protein L35

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L35P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL35_JANSC (Q28V95)

Other databases:

- EMBL:   CP000264
- RefSeq:   YP_508392.1
- ProteinModelPortal:   Q28V95
- SMR:   Q28V95
- STRING:   Q28V95
- GeneID:   3932891
- GenomeReviews:   CP000264_GR
- KEGG:   jan:Jann_0450
- eggNOG:   COG0291
- HOGENOM:   HBG734125
- OMA:   AHAGKRH
- ProtClustDB:   PRK00172
- BioCyc:   JSP290400:JANN_0450-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00514
- InterPro:   IPR021137
- InterPro:   IPR018265
- InterPro:   IPR001706
- PRINTS:   PR00064
- TIGRFAMs:   TIGR00001

Pfam domain/function: PF01632 Ribosomal_L35p

EC number: NA

Molecular weight: Translated: 7392; Mature: 7261

Theoretical pI: Translated: 11.63; Mature: 11.63

Prosite motif: PS00936 RIBOSOMAL_L35

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.6 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKMKTKSSAKKRFKVTSTGKVMAAQAGKQHGMIKRSNKFLRNARGTSELSAPDSKIVKS
CCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
YMPYDR
CCCCCC
>Mature Secondary Structure 
PKMKTKSSAKKRFKVTSTGKVMAAQAGKQHGMIKRSNKFLRNARGTSELSAPDSKIVKS
CCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
YMPYDR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA