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The map label for this gene is yhdW [H]

Identifier: 89052927

GI number: 89052927

Start: 440903

End: 441679

Strand: Direct

Name: yhdW [H]

Synonym: Jann_0436

Alternate gene names: 89052927

Gene position: 440903-441679 (Clockwise)

Preceding gene: 89052926

Following gene: 89052928

Centisome position: 10.21

GC content: 64.48

Gene sequence:

>777_bases
ATGAATCCGGCCCTTCCACCTGAATTCCTCGACCGACCGCTGACCCATCGCGGTCTGCATGACCGCAGTAAGGGCGTGAT
CGAGAACAGTGCCGGTGCGGTCCGTGCAGCGGTGGCGCACGGCTACGGGATTGAGATTGACGTCCAGCTGACCTCGGACG
GGGCGGCGATGGTGTTTCACGATGAGCGATTGGATCGTCTGACGGGCGAAAGCGGCCCGATCCGGGGATGGGCGGCGCGC
GATCTGGTGAACCTCACGCTGACCGGATCAAGCGAAACGGTCCCGACGCTCCCGGAGGTGCTGGAGATCGTGGGTGGCAG
GGTGCCCTTGTTGATCGAGTTGAAAGACCAGTCCGGCGGCACCGGCTCTGCCCCCGATGAGTTGGAACGTGCAGTGGCGA
AGGCGCTGGAGGGTTACGAAGGCCTCGTCGCCGTCATGTCGTTCAACCCCCACATGGTCGCCAACATGGCCAAGCGCGCG
CCAAGCGTGCCGCGAGGGATCGTGACCGATGGCTATACCGAGACGGAATGGCCCGACCTGTCGCCCGACACCTTGCAAGC
CCTGCGCGAAATCGGTGCCTTTGATGCCGTTGGAGCCAGCTTCATCAGCCACAATTGGGAGGATTTGGCCGCCCCCCGCG
TGGCAGAGCTGAAGGCCAGGGGCGTGCCGATCCTGTGCTGGACCGTGAAATCGGCCGAGGATGAGGCACAAGCGCGCCGC
GTGGCCGACAACATCACGTTCGAGGGCTACACGCCCACGCCTCGCGCCAAGGATTGA

Upstream 100 bases:

>100_bases
CTTTGGGCGATGCGGGGCGCCACGCCCGCTCAGCAGTCAGTGCGGGCGCATTGCCGTTCAATGTCGCGGTTGAGATCGAA
GGCATCTTCCAGATCAAGCC

Downstream 100 bases:

>100_bases
CCCAAGCCCGCGCGGCCCCATCTGTACGAAGACCCGCAGCGGAGCGTTGTCTTGGACGGTGACACCCAGATCAGCATCGA
GGCTCTTACCTCCCTGTCGC

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MNPALPPEFLDRPLTHRGLHDRSKGVIENSAGAVRAAVAHGYGIEIDVQLTSDGAAMVFHDERLDRLTGESGPIRGWAAR
DLVNLTLTGSSETVPTLPEVLEIVGGRVPLLIELKDQSGGTGSAPDELERAVAKALEGYEGLVAVMSFNPHMVANMAKRA
PSVPRGIVTDGYTETEWPDLSPDTLQALREIGAFDAVGASFISHNWEDLAAPRVAELKARGVPILCWTVKSAEDEAQARR
VADNITFEGYTPTPRAKD

Sequences:

>Translated_258_residues
MNPALPPEFLDRPLTHRGLHDRSKGVIENSAGAVRAAVAHGYGIEIDVQLTSDGAAMVFHDERLDRLTGESGPIRGWAAR
DLVNLTLTGSSETVPTLPEVLEIVGGRVPLLIELKDQSGGTGSAPDELERAVAKALEGYEGLVAVMSFNPHMVANMAKRA
PSVPRGIVTDGYTETEWPDLSPDTLQALREIGAFDAVGASFISHNWEDLAAPRVAELKARGVPILCWTVKSAEDEAQARR
VADNITFEGYTPTPRAKD
>Mature_258_residues
MNPALPPEFLDRPLTHRGLHDRSKGVIENSAGAVRAAVAHGYGIEIDVQLTSDGAAMVFHDERLDRLTGESGPIRGWAAR
DLVNLTLTGSSETVPTLPEVLEIVGGRVPLLIELKDQSGGTGSAPDELERAVAKALEGYEGLVAVMSFNPHMVANMAKRA
PSVPRGIVTDGYTETEWPDLSPDTLQALREIGAFDAVGASFISHNWEDLAAPRVAELKARGVPILCWTVKSAEDEAQARR
VADNITFEGYTPTPRAKD

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 27711; Mature: 27711

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPALPPEFLDRPLTHRGLHDRSKGVIENSAGAVRAAVAHGYGIEIDVQLTSDGAAMVFH
CCCCCCHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCEEEEE
DERLDRLTGESGPIRGWAARDLVNLTLTGSSETVPTLPEVLEIVGGRVPLLIELKDQSGG
HHHHHHHCCCCCCCCCEECCCEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEEECCCCC
TGSAPDELERAVAKALEGYEGLVAVMSFNPHMVANMAKRAPSVPRGIVTDGYTETEWPDL
CCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
SPDTLQALREIGAFDAVGASFISHNWEDLAAPRVAELKARGVPILCWTVKSAEDEAQARR
CHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCCHHHHHHHCCCCEEEEEECCCHHHHHHHH
VADNITFEGYTPTPRAKD
HHHCCEECCCCCCCCCCC
>Mature Secondary Structure
MNPALPPEFLDRPLTHRGLHDRSKGVIENSAGAVRAAVAHGYGIEIDVQLTSDGAAMVFH
CCCCCCHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCEEEEE
DERLDRLTGESGPIRGWAARDLVNLTLTGSSETVPTLPEVLEIVGGRVPLLIELKDQSGG
HHHHHHHCCCCCCCCCEECCCEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEEECCCCC
TGSAPDELERAVAKALEGYEGLVAVMSFNPHMVANMAKRAPSVPRGIVTDGYTETEWPDL
CCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
SPDTLQALREIGAFDAVGASFISHNWEDLAAPRVAELKARGVPILCWTVKSAEDEAQARR
CHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCCHHHHHHHCCCCEEEEEECCCHHHHHHHH
VADNITFEGYTPTPRAKD
HHHCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]