BacMap

Definition	Jannaschia sp. CCS1 chromosome, complete genome.
Accession	NC_007802
Length	4,317,977

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The map label for this gene is ucpA [C]

Identifier: 89052896

GI number: 89052896

Start: 408228

End: 408977

Strand: Direct

Name: ucpA [C]

Synonym: Jann_0405

Alternate gene names: 89052896

Gene position: 408228-408977 (Clockwise)

Preceding gene: 89052889

Following gene: 89052897

Centisome position: 9.45

GC content: 65.07

Gene sequence:

>750_bases
ATGGCGCATGTGGTAGATGGAAAAGTCGTGGCGATCACCGGGGCAAGCCGGGGTATCGGTGCCGCCGCCGCGCGCGAATT
TGCGGCGTTGGGCGCGAAGGTCGTGCTTTTGGCCCGGTCGCGGGATGCGATTGCGGAACTGGCAGGCGAGATTGGCGAAA
ACGCCCTGGCCGTGCCCTGTGATGTGGTGCGGTATTGGGAGGTCGAGGCCGCCTTCGGGGCTGCCGTGGATACCTTTGGC
GCGCTCGACGTGGTGATCAACAATGCCGGTGTGATCGAGCCTGTGGCGCGGATCGAGGATGCCAACCCTGATGGCTGGGG
TCAGGCCATCGACATCAACCTCAAGGGCACGTTCAACGGCGTCCGTGCGGCGCTGCCGCATATGGGCGGCGGTGGGACGA
TCATCGGCATCTCGTCGGGGGCCGCGACCAATGCGCTGGAAGGCTGGTCGCATTATTGCGCGTCCAAGGCCGCCGCGTTG
ATGCTGACCCGCTCGCTCCACAAGGAAATGGGCGATCGGGGCATTCGCGCCCTGGGCCTGTCGCCGGGCACTGTGGCGAC
CCAGATGCAGGTGGAGATCAAGGCCTCAGGCGTGAACCCGGTGGCGGGGCTCGACTGGTCCGATCATATTCCGCCGGAAT
GGCCCGCCAAGGCATTGGCCTGGATGTGTACCGAGGCGGCAGATCCCTATCTCGGTGGCGATATCTCGCTTCGGGATGAA
GGTATTCGCGCGGTGGTCGGTCTCGCATGA

Upstream 100 bases:

>100_bases
GTGGCGGGACGCGTCAAGTCGCGATCACCGTAAATGGCTGGTCGCCGCCGATTGGGGGCGTTACTTTCAGCGCAAACGCT
GTTGTGAGAGGGGTAGCATC

Downstream 100 bases:

>100_bases
GCGAGAGCGCAGATAAGGGACGCCGTTCGTGATCGACGTAAGCGACCAAGATGGCCTGCGCAGTGTCACGCTCAGTCGCC
CGGAGAAAGCCAATTCCCTG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MAHVVDGKVVAITGASRGIGAAAAREFAALGAKVVLLARSRDAIAELAGEIGENALAVPCDVVRYWEVEAAFGAAVDTFG
ALDVVINNAGVIEPVARIEDANPDGWGQAIDINLKGTFNGVRAALPHMGGGGTIIGISSGAATNALEGWSHYCASKAAAL
MLTRSLHKEMGDRGIRALGLSPGTVATQMQVEIKASGVNPVAGLDWSDHIPPEWPAKALAWMCTEAADPYLGGDISLRDE
GIRAVVGLA

Sequences:

>Translated_249_residues
MAHVVDGKVVAITGASRGIGAAAAREFAALGAKVVLLARSRDAIAELAGEIGENALAVPCDVVRYWEVEAAFGAAVDTFG
ALDVVINNAGVIEPVARIEDANPDGWGQAIDINLKGTFNGVRAALPHMGGGGTIIGISSGAATNALEGWSHYCASKAAAL
MLTRSLHKEMGDRGIRALGLSPGTVATQMQVEIKASGVNPVAGLDWSDHIPPEWPAKALAWMCTEAADPYLGGDISLRDE
GIRAVVGLA
>Mature_248_residues
AHVVDGKVVAITGASRGIGAAAAREFAALGAKVVLLARSRDAIAELAGEIGENALAVPCDVVRYWEVEAAFGAAVDTFGA
LDVVINNAGVIEPVARIEDANPDGWGQAIDINLKGTFNGVRAALPHMGGGGTIIGISSGAATNALEGWSHYCASKAAALM
LTRSLHKEMGDRGIRALGLSPGTVATQMQVEIKASGVNPVAGLDWSDHIPPEWPAKALAWMCTEAADPYLGGDISLRDEG
IRAVVGLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=236, Percent_Identity=32.2033898305085, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI31542939, Length=218, Percent_Identity=32.5688073394495, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI40254992, Length=251, Percent_Identity=27.0916334661355, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=28.515625, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI224922801, Length=171, Percent_Identity=34.5029239766082, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI59889578, Length=181, Percent_Identity=30.3867403314917, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI126723191, Length=178, Percent_Identity=33.1460674157303, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI109715829, Length=245, Percent_Identity=30.6122448979592, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI4504505, Length=237, Percent_Identity=29.957805907173, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI19923817, Length=204, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI5031737, Length=191, Percent_Identity=31.413612565445, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI33667109, Length=196, Percent_Identity=30.6122448979592, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI7706318, Length=191, Percent_Identity=29.8429319371728, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=31.7948717948718, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI83715985, Length=184, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI7705925, Length=195, Percent_Identity=28.7179487179487, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI210032110, Length=191, Percent_Identity=29.8429319371728, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI40807363, Length=194, Percent_Identity=29.3814432989691, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI126723750, Length=243, Percent_Identity=28.3950617283951, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI15277342, Length=235, Percent_Identity=29.7872340425532, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI31543615, Length=173, Percent_Identity=32.3699421965318, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI66933014, Length=200, Percent_Identity=32.5, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI87082100, Length=200, Percent_Identity=38.5, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=32.4468085106383, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787905, Length=234, Percent_Identity=32.4786324786325, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787820, Length=223, Percent_Identity=27.8026905829596, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1790717, Length=189, Percent_Identity=30.6878306878307, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789208, Length=199, Percent_Identity=28.1407035175879, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI2367175, Length=242, Percent_Identity=28.9256198347107, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787526, Length=198, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI2367365, Length=235, Percent_Identity=31.063829787234, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789378, Length=185, Percent_Identity=29.7297297297297, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082160, Length=215, Percent_Identity=26.9767441860465, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786812, Length=186, Percent_Identity=31.7204301075269, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17544670, Length=199, Percent_Identity=32.6633165829146, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=274, Percent_Identity=29.5620437956204, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=30, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=199, Percent_Identity=31.6582914572864, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=191, Percent_Identity=30.8900523560209, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17538480, Length=277, Percent_Identity=30.6859205776173, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI193204405, Length=192, Percent_Identity=33.8541666666667, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=196, Percent_Identity=32.1428571428571, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=27.6515151515151, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=192, Percent_Identity=33.8541666666667, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17560676, Length=238, Percent_Identity=25.6302521008403, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17567345, Length=203, Percent_Identity=31.5270935960591, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=192, Percent_Identity=30.2083333333333, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=190, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=195, Percent_Identity=31.2820512820513, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=28.8973384030418, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=198, Percent_Identity=30.8080808080808, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=192, Percent_Identity=31.25, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=27.3764258555133, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=270, Percent_Identity=28.1481481481481, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=201, Percent_Identity=32.8358208955224, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=213, Percent_Identity=27.2300469483568, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=31.7708333333333, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=29.4736842105263, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=197, Percent_Identity=30.4568527918782, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=275, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=193, Percent_Identity=29.0155440414508, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=221, Percent_Identity=29.8642533936652, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=193, Percent_Identity=28.4974093264249, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=193, Percent_Identity=28.4974093264249, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25152911, Length=199, Percent_Identity=28.643216080402, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=197, Percent_Identity=30.4568527918782, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=190, Percent_Identity=28.9473684210526, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=195, Percent_Identity=26.1538461538462, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6322226, Length=191, Percent_Identity=31.9371727748691, Blast_Score=97, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6322227, Length=262, Percent_Identity=29.3893129770992, Blast_Score=94, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6323882, Length=214, Percent_Identity=29.4392523364486, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6324126, Length=224, Percent_Identity=25.8928571428571, Blast_Score=65, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6322861, Length=192, Percent_Identity=30.7291666666667, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24643142, Length=185, Percent_Identity=32.4324324324324, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI28571526, Length=188, Percent_Identity=30.8510638297872, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI21357041, Length=207, Percent_Identity=28.5024154589372, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI17737361, Length=204, Percent_Identity=32.3529411764706, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24644339, Length=189, Percent_Identity=30.1587301587302, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21355319, Length=189, Percent_Identity=29.6296296296296, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI23397609, Length=191, Percent_Identity=31.9371727748691, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281364494, Length=199, Percent_Identity=30.6532663316583, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24639444, Length=192, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24641232, Length=201, Percent_Identity=31.8407960199005, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24648693, Length=197, Percent_Identity=31.4720812182741, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI21355889, Length=197, Percent_Identity=31.4720812182741, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI281364892, Length=181, Percent_Identity=31.4917127071823, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI116007236, Length=197, Percent_Identity=30.4568527918782, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24665247, Length=194, Percent_Identity=28.3505154639175, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI221331216, Length=205, Percent_Identity=27.3170731707317, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21358495, Length=202, Percent_Identity=27.7227722772277, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI18859837, Length=237, Percent_Identity=27.0042194092827, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24665243, Length=194, Percent_Identity=28.3505154639175, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21357673, Length=201, Percent_Identity=30.8457711442786, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24644337, Length=209, Percent_Identity=28.7081339712919, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221331218, Length=205, Percent_Identity=27.3170731707317, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24584752, Length=191, Percent_Identity=28.2722513089005, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI28571387, Length=199, Percent_Identity=30.6532663316583, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25544; Mature: 25413

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHVVDGKVVAITGASRGIGAAAAREFAALGAKVVLLARSRDAIAELAGEIGENALAVPC
CCEEECCEEEEEECCCCCCCHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHCCCCEECCH
DVVRYWEVEAAFGAAVDTFGALDVVINNAGVIEPVARIEDANPDGWGQAIDINLKGTFNG
HHEEEEEHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCH
VRAALPHMGGGGTIIGISSGAATNALEGWSHYCASKAAALMLTRSLHKEMGDRGIRALGL
HHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
SPGTVATQMQVEIKASGVNPVAGLDWSDHIPPEWPAKALAWMCTEAADPYLGGDISLRDE
CCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCC
GIRAVVGLA
CCEEEEECC
>Mature Secondary Structure 
AHVVDGKVVAITGASRGIGAAAAREFAALGAKVVLLARSRDAIAELAGEIGENALAVPC
CEEECCEEEEEECCCCCCCHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHCCCCEECCH
DVVRYWEVEAAFGAAVDTFGALDVVINNAGVIEPVARIEDANPDGWGQAIDINLKGTFNG
HHEEEEEHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCH
VRAALPHMGGGGTIIGISSGAATNALEGWSHYCASKAAALMLTRSLHKEMGDRGIRALGL
HHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
SPGTVATQMQVEIKASGVNPVAGLDWSDHIPPEWPAKALAWMCTEAADPYLGGDISLRDE
CCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCC
GIRAVVGLA
CCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA