Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89052858

Identifier: 89052858

GI number: 89052858

Start: 370189

End: 370539

Strand: Reverse

Name: 89052858

Synonym: Jann_0367

Alternate gene names: NA

Gene position: 370539-370189 (Counterclockwise)

Preceding gene: 89052865

Following gene: 89052857

Centisome position: 8.58

GC content: 62.11

Gene sequence:

>351_bases
ATGTCTGAGTACCTGCCTAAAGAGATTCGCGACCAACTGGCCGCCGCCCGACGTCAGGGGAAGCGCAAGCGTGCGACACG
GTCTGTCCATGTGGGGGATGAGGCGTTTGCCATCATCGAAATGTCCGATCACGGCTTCGCGCTGGATACCGAAACAGCGC
CACGTCTGCGCGGCCTGATCGACATCTATGACGGCGCGCAGCACCTGTATCAGGCCCTGATCATGGCCTCGTCCGAGGAT
GGGGATCTGATGCGCTACGACTTCAAGCGCAACACCGCCACGGCCCGCACCGCCCCGGTGGATTTCGTCCAATCCGATAC
CCGCCCCGCAGGATTGCTGTCCAAGGCGTAG

Upstream 100 bases:

>100_bases
TCATGAACAGGCCCGAAATTTGCACCGGCTGTGTCATTGACCTGACATCAAGATCAGCCACCTTGCTGGGCGTTCGACCC
CACCTTCGTCGGAGGATCCG

Downstream 100 bases:

>100_bases
GCTCTGCGCACAAATCCGCGCCATTTCCCGGCACTGGCGCGATGATCTCCCGCGCTTGGCCGTAAGCACGCCCCATTTTT
CGCAGTACGTGCGCCGGATC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MSEYLPKEIRDQLAAARRQGKRKRATRSVHVGDEAFAIIEMSDHGFALDTETAPRLRGLIDIYDGAQHLYQALIMASSED
GDLMRYDFKRNTATARTAPVDFVQSDTRPAGLLSKA

Sequences:

>Translated_116_residues
MSEYLPKEIRDQLAAARRQGKRKRATRSVHVGDEAFAIIEMSDHGFALDTETAPRLRGLIDIYDGAQHLYQALIMASSED
GDLMRYDFKRNTATARTAPVDFVQSDTRPAGLLSKA
>Mature_115_residues
SEYLPKEIRDQLAAARRQGKRKRATRSVHVGDEAFAIIEMSDHGFALDTETAPRLRGLIDIYDGAQHLYQALIMASSEDG
DLMRYDFKRNTATARTAPVDFVQSDTRPAGLLSKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12956; Mature: 12825

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEYLPKEIRDQLAAARRQGKRKRATRSVHVGDEAFAIIEMSDHGFALDTETAPRLRGLI
CCCCCCHHHHHHHHHHHHHHHHHHHHCEEEECCCEEEEEEECCCCEEECCCCCHHHHHHH
DIYDGAQHLYQALIMASSEDGDLMRYDFKRNTATARTAPVDFVQSDTRPAGLLSKA
HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SEYLPKEIRDQLAAARRQGKRKRATRSVHVGDEAFAIIEMSDHGFALDTETAPRLRGLI
CCCCCHHHHHHHHHHHHHHHHHHHHCEEEECCCEEEEEEECCCCEEECCCCCHHHHHHH
DIYDGAQHLYQALIMASSEDGDLMRYDFKRNTATARTAPVDFVQSDTRPAGLLSKA
HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA