Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

Click here to switch to the map view.

The map label for this gene is 89052836

Identifier: 89052836

GI number: 89052836

Start: 350095

End: 350715

Strand: Direct

Name: 89052836

Synonym: Jann_0345

Alternate gene names: NA

Gene position: 350095-350715 (Clockwise)

Preceding gene: 89052835

Following gene: 89052837

Centisome position: 8.11

GC content: 58.13

Gene sequence:

>621_bases
ATGAAACATATCTCCCTGGCCGCTTTGGCCCTTCTTATGGCGGCCCCAGCCTCCGCAGGCGGGGTGGTTGACCCCGCCCC
CCTTGATCCTGTCATCATCTCGCAACCCGATCACGACTGGACTGGCTTTTACGCCGGTGCGCAGCTTGATCTGGTCGCCA
ACGCCGAAACGACATTGGAGCCGTTTGGCCAGCTGATGAGCTTTAATGGCGAACTTGCGGGGCTTTTTGCCGGCTATCGC
TACGACTTTGGCGACATCGTCCTTGGCGGTGAGATCGACTACATGCGCGGCACCTATGATGTGGATGAGATCGCCCCAAA
CATCCTGCTCCTGTCGCCGGAAGTTGACGTTGAATTGCTGCGTGCGGGGATCGAGGTCGGGTATGATCTTGGCGATTTTC
TGCCCTATGCGACTGCCGGATATGCGCACCTGACGCTGGACTATGGCGGCTTTGGTGAGGATAGCGGCGACGGCTGGTTT
GCGGGCATCGGTGCCGACTACCGTGTCAGTGAAAATGTCACTGTCGGGGCCGAGCTTCTGCATCATCAATTCGAGTTCAA
CGACTTCGGATTGCAGCACGAGCTGACCACCGTTGGCATCAACGTCGCCTTCACGTTCTGA

Upstream 100 bases:

>100_bases
CCCGGATCACGTATCGCCGGAAGGTACGGAATCCATGCCTGCCAGCAAGCCGGTCGGAGTGGTATTGAGCTCAAATTATT
TTTAATGATGAGCTTATAAA

Downstream 100 bases:

>100_bases
ACGCCGCTGCGGCGCGCGGAGCCCCTGAGACGCGCGCCGTTTTGCGGGCTGAATCAGGCTGTGACGCGCGGGCCACAGCA
TCGGCCTGCGCGTCTACTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKHISLAALALLMAAPASAGGVVDPAPLDPVIISQPDHDWTGFYAGAQLDLVANAETTLEPFGQLMSFNGELAGLFAGYR
YDFGDIVLGGEIDYMRGTYDVDEIAPNILLLSPEVDVELLRAGIEVGYDLGDFLPYATAGYAHLTLDYGGFGEDSGDGWF
AGIGADYRVSENVTVGAELLHHQFEFNDFGLQHELTTVGINVAFTF

Sequences:

>Translated_206_residues
MKHISLAALALLMAAPASAGGVVDPAPLDPVIISQPDHDWTGFYAGAQLDLVANAETTLEPFGQLMSFNGELAGLFAGYR
YDFGDIVLGGEIDYMRGTYDVDEIAPNILLLSPEVDVELLRAGIEVGYDLGDFLPYATAGYAHLTLDYGGFGEDSGDGWF
AGIGADYRVSENVTVGAELLHHQFEFNDFGLQHELTTVGINVAFTF
>Mature_206_residues
MKHISLAALALLMAAPASAGGVVDPAPLDPVIISQPDHDWTGFYAGAQLDLVANAETTLEPFGQLMSFNGELAGLFAGYR
YDFGDIVLGGEIDYMRGTYDVDEIAPNILLLSPEVDVELLRAGIEVGYDLGDFLPYATAGYAHLTLDYGGFGEDSGDGWF
AGIGADYRVSENVTVGAELLHHQFEFNDFGLQHELTTVGINVAFTF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22073; Mature: 22073

Theoretical pI: Translated: 3.75; Mature: 3.75

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHISLAALALLMAAPASAGGVVDPAPLDPVIISQPDHDWTGFYAGAQLDLVANAETTLE
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCCEEEEEECCCCCHH
PFGQLMSFNGELAGLFAGYRYDFGDIVLGGEIDYMRGTYDVDEIAPNILLLSPEVDVELL
HHHHHHHCCCCEEEEEECEEECCCCEEECCEEEECCCCCCHHHHCCCEEEECCCCCHHHH
RAGIEVGYDLGDFLPYATAGYAHLTLDYGGFGEDSGDGWFAGIGADYRVSENVTVGAELL
HHHHHCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCEEECCCCCHHHHHH
HHQFEFNDFGLQHELTTVGINVAFTF
HHHCCCCCCCCEEEEEEEEEEEEEEC
>Mature Secondary Structure
MKHISLAALALLMAAPASAGGVVDPAPLDPVIISQPDHDWTGFYAGAQLDLVANAETTLE
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCCEEEEEECCCCCHH
PFGQLMSFNGELAGLFAGYRYDFGDIVLGGEIDYMRGTYDVDEIAPNILLLSPEVDVELL
HHHHHHHCCCCEEEEEECEEECCCCEEECCEEEECCCCCCHHHHCCCEEEECCCCCHHHH
RAGIEVGYDLGDFLPYATAGYAHLTLDYGGFGEDSGDGWFAGIGADYRVSENVTVGAELL
HHHHHCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCEEECCCCCHHHHHH
HHQFEFNDFGLQHELTTVGINVAFTF
HHHCCCCCCCCEEEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA