| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89052779
Identifier: 89052779
GI number: 89052779
Start: 293954
End: 294967
Strand: Reverse
Name: 89052779
Synonym: Jann_0288
Alternate gene names: NA
Gene position: 294967-293954 (Counterclockwise)
Preceding gene: 89052780
Following gene: 89052778
Centisome position: 6.83
GC content: 63.31
Gene sequence:
>1014_bases ATGCTAAATACCCTTATCATTCGTGCGGCTGCGGGATGCACCGTGATTATCGGCGGCACTCTGTTCGCCATGGAATCGGG CTGGATCGCCCAGTCCGGACCAGCGCAGGCCGCAGACCAGGCCGCCAACGGCCAATCCCTGATCTCCTCTTCGCAACCCA CGGGCTCCATGGGTCCCGCCTTGCCCGTGATCGAGGAAAACAACGTGATCGTGCCCTTGGCCGAGCAATCCCTCGCCGTT GAGGCGACGATTGTTCCCACCTCCTTCAACGGGCCAGCGACCACACCCGCAGCCCCAGCGACGGGGCCCACGGACGACGT TGGCGGGGTCAGCCCACTGGGTTTGCCCTGCGGGATCAACACGACCGCAACGGCGATGCCAGCGGCCATGGTGGCACTTG ATGTCACGGCGCCGTGCCGCGCGAATGCCGCGGTGACGATTACCCATTCCGGCCTGCAAATAGAGACTTCGACAGATGCA GTCGGCCTGCTGACCCTTGATATTCCGGCGTTCGAGACGCCAGCCTTCTTCTCCGTCACCTTCGCGGACGGGGTGGAAGA AGCGGTTCTGGTCAGTCTTCCGGATCTGCAGGACTATGACCGGATCGGCCTCAACTGGCAGGGCGACATGGGGCTGGAGC TGCACGCCATGGAGTTCGGCGCGGCTTTCGGCGACGCAGGCCACATCTGGCAGGACACCCCAGCCGGACCCGAAGTCGCA ATCGCGGGGGATGGCGGTTTCCTGTCCGTTGTTGAGACGGGCGATAGTTTTGCCCAGATCTATACGCTGCCCCGCGCGAC CCTGCGTGAAGGGGAGCAGGTGCGGCTCTCCATCGACGCGCCGGTCACGCTGGCCAATTGCACCCGTGATGTCCTTGCAC GCACCCTGCGAACTGAAGCCGCCGGTCCTGTCGATGTGACTGAATTGACCTTCACGGCCCCCCCTTGTGACGCAGTGGGT GACGTTCTGGTCTTGCAAAACCTGCTGGACGACCTGAGACTCGCGTCGAATTAA
Upstream 100 bases:
>100_bases GTGGAGGGAAATCGCCGTGGATTCCCTCCAATTCCGGCACAATCATGCCCCACTCATGAACCAAACCTCACCCTGAGACA TTCTGGTGGAGCGTGTGGTC
Downstream 100 bases:
>100_bases GGCCAACGCCAGAGGTTTCGCATGCCGAAACACATGAGGGCGGTCCTTGGGGCTGCCCTTTTTTCTTGTCTGCTTGCTCC CGCCGCTGCGCAGGATGTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MLNTLIIRAAAGCTVIIGGTLFAMESGWIAQSGPAQAADQAANGQSLISSSQPTGSMGPALPVIEENNVIVPLAEQSLAV EATIVPTSFNGPATTPAAPATGPTDDVGGVSPLGLPCGINTTATAMPAAMVALDVTAPCRANAAVTITHSGLQIETSTDA VGLLTLDIPAFETPAFFSVTFADGVEEAVLVSLPDLQDYDRIGLNWQGDMGLELHAMEFGAAFGDAGHIWQDTPAGPEVA IAGDGGFLSVVETGDSFAQIYTLPRATLREGEQVRLSIDAPVTLANCTRDVLARTLRTEAAGPVDVTELTFTAPPCDAVG DVLVLQNLLDDLRLASN
Sequences:
>Translated_337_residues MLNTLIIRAAAGCTVIIGGTLFAMESGWIAQSGPAQAADQAANGQSLISSSQPTGSMGPALPVIEENNVIVPLAEQSLAV EATIVPTSFNGPATTPAAPATGPTDDVGGVSPLGLPCGINTTATAMPAAMVALDVTAPCRANAAVTITHSGLQIETSTDA VGLLTLDIPAFETPAFFSVTFADGVEEAVLVSLPDLQDYDRIGLNWQGDMGLELHAMEFGAAFGDAGHIWQDTPAGPEVA IAGDGGFLSVVETGDSFAQIYTLPRATLREGEQVRLSIDAPVTLANCTRDVLARTLRTEAAGPVDVTELTFTAPPCDAVG DVLVLQNLLDDLRLASN >Mature_337_residues MLNTLIIRAAAGCTVIIGGTLFAMESGWIAQSGPAQAADQAANGQSLISSSQPTGSMGPALPVIEENNVIVPLAEQSLAV EATIVPTSFNGPATTPAAPATGPTDDVGGVSPLGLPCGINTTATAMPAAMVALDVTAPCRANAAVTITHSGLQIETSTDA VGLLTLDIPAFETPAFFSVTFADGVEEAVLVSLPDLQDYDRIGLNWQGDMGLELHAMEFGAAFGDAGHIWQDTPAGPEVA IAGDGGFLSVVETGDSFAQIYTLPRATLREGEQVRLSIDAPVTLANCTRDVLARTLRTEAAGPVDVTELTFTAPPCDAVG DVLVLQNLLDDLRLASN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34523; Mature: 34523
Theoretical pI: Translated: 3.70; Mature: 3.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNTLIIRAAAGCTVIIGGTLFAMESGWIAQSGPAQAADQAANGQSLISSSQPTGSMGPA CCCEEEEEECCCCEEEECCEEEEEECCCEECCCCCHHHHHCCCCHHHHCCCCCCCCCCCC LPVIEENNVIVPLAEQSLAVEATIVPTSFNGPATTPAAPATGPTDDVGGVSPLGLPCGIN CCEEECCCEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TTATAMPAAMVALDVTAPCRANAAVTITHSGLQIETSTDAVGLLTLDIPAFETPAFFSVT CCHHHHCEEEEEEEECCCCCCCCEEEEEECCEEEEECCCEEEEEEEECCCCCCCCEEEEE FADGVEEAVLVSLPDLQDYDRIGLNWQGDMGLELHAMEFGAAFGDAGHIWQDTPAGPEVA ECCCCCCEEEEECCCCCCHHCCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEE IAGDGGFLSVVETGDSFAQIYTLPRATLREGEQVRLSIDAPVTLANCTRDVLARTLRTEA EECCCCEEEEEECCCCEEEEEECCCHHHCCCCEEEEEECCCEEHHHHHHHHHHHHHHHCC AGPVDVTELTFTAPPCDAVGDVLVLQNLLDDLRLASN CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLNTLIIRAAAGCTVIIGGTLFAMESGWIAQSGPAQAADQAANGQSLISSSQPTGSMGPA CCCEEEEEECCCCEEEECCEEEEEECCCEECCCCCHHHHHCCCCHHHHCCCCCCCCCCCC LPVIEENNVIVPLAEQSLAVEATIVPTSFNGPATTPAAPATGPTDDVGGVSPLGLPCGIN CCEEECCCEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TTATAMPAAMVALDVTAPCRANAAVTITHSGLQIETSTDAVGLLTLDIPAFETPAFFSVT CCHHHHCEEEEEEEECCCCCCCCEEEEEECCEEEEECCCEEEEEEEECCCCCCCCEEEEE FADGVEEAVLVSLPDLQDYDRIGLNWQGDMGLELHAMEFGAAFGDAGHIWQDTPAGPEVA ECCCCCCEEEEECCCCCCHHCCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEE IAGDGGFLSVVETGDSFAQIYTLPRATLREGEQVRLSIDAPVTLANCTRDVLARTLRTEA EECCCCEEEEEECCCCEEEEEECCCHHHCCCCEEEEEECCCEEHHHHHHHHHHHHHHHCC AGPVDVTELTFTAPPCDAVGDVLVLQNLLDDLRLASN CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA